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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9110 and 9111 are separated by 385 nucleotides
9111 and 9112 are separated by 500 nucleotides
9112 and 9113 are separated by 197 nucleotides
9113 and 9114 are separated by 332 nucleotides
mRNA_742: 9110 - HMMPfam-SPT2 chromatin protein-PF08243,SMART-SPT2 chromatin protein-SM00784, at 1,774,415 to 1,775,869
9110
mRNA_743: 9111 - K08493 VTI1 vesicle transport through interaction with t-SNAREs 1, at 1,776,255 to 1,777,416
9111
mRNA_744: 9112 - KOG2533 Permease of the major facilitator superfamily, at 1,777,917 to 1,780,253
9112
mRNA_745: 9113 - K00101 E1.1.2.3, lldD L-lactate dehydrogenase (cytochrome), at 1,780,451 to 1,782,779
9113
mRNA_746: 9114 - KOG0143 Iron/ascorbate family oxidoreductases, at 1,783,112 to 1,784,758
9114
Group
Condition
mRNA
_742
mRNA
_743
mRNA
_744
mRNA
_745
mRNA
_746
9110
9111
9112
9113
9114
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
-2.6
-0.2
-0.3
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-1.4
-0.3
-0.1
-0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-1.2
-0.2
+0.1
+0.0
auxotrophy
Dropout Complete
-0.1
-0.2
-0.8
-0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.4
-0.6
+0.1
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.5
+0.4
-0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.2
+0.3
+0.2
-0.5
auxotrophy
YNB Glucose
-0.0
-0.3
-0.4
+0.4
+0.3
growth on ricinoleic acid
YNB Glucose
+0.3
-0.4
-0.0
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.4
+0.2
+0.3
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.5
-0.2
-0.6
+0.3
+0.2
growth on oleic acid
YNB Glucose
+0.3
+0.1
-0.7
+0.2
+0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.2
-0.0
+0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.3
-0.0
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.3
-0.4
+0.2
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.6
-0.0
+0.4
+0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.1
+0.3
+0.4
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+1.5
-0.3
+0.4
-0.1
growth on ypd
YPD
+0.0
+0.8
-0.3
+0.2
+0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+1.5
-0.0
+0.4
-0.3
growth on oleic acid
YNB Oleic Acid
+0.2
+1.2
+0.0
+0.0
+0.3
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