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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9117 and 9118 are separated by 92 nucleotides
9118 and 9119 are separated by 117 nucleotides
9119 and 9120 are separated by 180 nucleotides
9120 and 9121 are separated by 751 nucleotides
mRNA_749: 9117 - Hypothetical Protein, at 1,789,709 to 1,790,560
9117
mRNA_750: 9118 - K12840 RBM17, SPF45 splicing factor 45, at 1,790,653 to 1,793,277
9118
mRNA_751: 9119 - K19476 IST1 vacuolar protein sorting-associated protein IST1, at 1,793,395 to 1,794,980
9119
mRNA_752: 9120 - K12822 RBM25, S164 RNA-binding protein 25, at 1,795,161 to 1,797,625
9120
mRNA_753: 9121 - K02737 PSMB5 20S proteasome subunit beta 5, at 1,798,377 to 1,799,752
9121
Group
Condition
mRNA
_749
mRNA
_750
mRNA
_751
mRNA
_752
mRNA
_753
9117
9118
9119
9120
9121
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.2
-0.6
-0.9
-1.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.5
-0.4
-0.8
-1.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.7
-0.3
-0.2
-1.4
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.9
-0.2
-0.3
+0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.3
-0.0
-0.3
-0.3
growth on oleic acid
YNB Glucose
N.D.
-0.5
-0.1
-0.3
+0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.3
+0.0
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.5
+0.5
-0.3
-1.3
growth on oleic acid
YNB Oleic Acid
N.D.
-0.5
-0.0
-0.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.4
-0.1
-0.4
+0.5
growth on ypd
YPD
N.D.
-0.1
+0.2
+0.0
-0.4
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.3
-0.2
-0.3
+0.6
auxotrophy
Dropout Complete
N.D.
-0.3
-0.5
-0.3
+1.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.1
-0.3
-0.0
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.4
-0.1
+0.5
+0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
-0.3
-0.4
+1.2
auxotrophy
YNB Glucose
N.D.
-0.4
-0.3
+0.0
+1.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.4
+0.2
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.4
+0.4
+0.1
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
-0.3
+0.1
+0.6
+0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.3
+0.5
+0.8
+0.8
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