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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9119 and 9120 are separated by 180 nucleotides
9120 and 9121 are separated by 751 nucleotides
9121 and 9122 are separated by 278 nucleotides
9122 and 9123 are separated by 499 nucleotides
mRNA_751: 9119 - K19476 IST1 vacuolar protein sorting-associated protein IST1, at 1,793,395 to 1,794,980
9119
mRNA_752: 9120 - K12822 RBM25, S164 RNA-binding protein 25, at 1,795,161 to 1,797,625
9120
mRNA_753: 9121 - K02737 PSMB5 20S proteasome subunit beta 5, at 1,798,377 to 1,799,752
9121
mRNA_754: 9122 - KOG0143 Iron/ascorbate family oxidoreductases, at 1,800,031 to 1,801,635
9122
mRNA_755: 9123 - HMMPfam-Ribosomal protein L9, N-terminal domain-PF01281,SUPERFAMILY--SSF55658, at 1,802,135 to 1,802,908
9123
Group
Condition
mRNA
_751
mRNA
_752
mRNA
_753
mRNA
_754
mRNA
_755
9119
9120
9121
9122
9123
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
-0.9
-1.1
-0.5
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
-0.8
-1.3
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
-0.3
-1.3
+0.2
-0.8
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.2
-1.4
+0.1
+0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.3
-0.3
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.1
+0.3
-0.0
-1.2
growth on oleic acid
YNB Oleic Acid
-0.0
-0.2
+0.1
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
+0.1
+0.1
-0.2
-0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.4
-0.1
+0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.4
+0.5
-0.2
+0.1
auxotrophy
Dropout Complete
-0.5
-0.3
+1.0
-0.0
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.3
+0.6
+0.2
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.3
+0.3
-0.6
+1.1
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.4
+1.2
+0.2
-0.4
growth on oleic acid
YNB Glucose
-0.1
-0.3
+0.0
-0.0
+0.8
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.0
+0.5
+0.1
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.5
+0.2
-0.2
+0.4
growth on ypd
YPD
+0.2
+0.0
-0.4
+0.1
+0.9
auxotrophy
YNB Glucose
-0.3
+0.0
+1.0
-0.1
+0.2
growth on ricinoleic acid
YNB Glucose
+0.1
+0.6
+0.7
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
+0.8
+0.8
-0.0
-0.6
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