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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9121 and 9122 are separated by 278 nucleotides
9122 and 9123 are separated by 499 nucleotides
9123 and 9124 are separated by 89 nucleotides
9124 and 9125 are separated by 359 nucleotides
mRNA_753: 9121 - K02737 PSMB5 20S proteasome subunit beta 5, at 1,798,377 to 1,799,752
9121
mRNA_754: 9122 - KOG0143 Iron/ascorbate family oxidoreductases, at 1,800,031 to 1,801,635
9122
mRNA_755: 9123 - HMMPfam-Ribosomal protein L9, N-terminal domain-PF01281,SUPERFAMILY--SSF55658, at 1,802,135 to 1,802,908
9123
mRNA_756: 9124 - HMMPfam-Protein of unknown function (DUF3074)-PF11274,SUPERFAMILY--SSF55961, at 1,802,998 to 1,803,902
9124
mRNA_757: 9125 - K01493 comEB dCMP deaminase, at 1,804,262 to 1,807,266
9125
Group
Condition
mRNA
_753
mRNA
_754
mRNA
_755
mRNA
_756
mRNA
_757
9121
9122
9123
9124
9125
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.1
-0.5
-0.2
-0.6
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.3
+0.2
-0.8
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.2
-0.5
-0.7
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.0
-1.2
-0.3
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-1.3
-0.2
+0.3
-0.4
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-1.4
+0.1
+0.5
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.8
-0.0
-0.6
-0.2
-0.4
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
-0.1
+0.3
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.2
+0.1
+0.6
+0.3
growth on ypd
YPD
-0.4
+0.1
+0.9
-0.3
+0.5
auxotrophy
Dropout Complete
+1.0
-0.0
-0.0
+0.3
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
+0.2
+0.4
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.6
+0.2
-0.1
+0.5
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.6
+1.1
+0.7
-0.5
auxotrophy
YNB Glucose 75mM Methionine
+1.2
+0.2
-0.4
+0.4
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.5
-0.2
+0.1
+0.6
+0.4
growth on oleic acid
YNB Glucose
+0.0
-0.0
+0.8
+0.6
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.2
+0.4
+1.0
+0.2
growth on ricinoleic acid
YNB Glucose
+0.7
-0.2
+0.2
+0.7
+0.2
auxotrophy
YNB Glucose
+1.0
-0.1
+0.2
+0.7
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
+0.1
+0.3
+1.2
-0.0
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