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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9124 and 9125 are separated by 359 nucleotides
9125 and 9126 are separated by 52 nucleotides
9126 and 9127 are separated by 271 nucleotides
9127 and 9128 are separated by 394 nucleotides
mRNA_756: 9124 - HMMPfam-Protein of unknown function (DUF3074)-PF11274,SUPERFAMILY--SSF55961, at 1,802,998 to 1,803,902
9124
mRNA_757: 9125 - K01493 comEB dCMP deaminase, at 1,804,262 to 1,807,266
9125
mRNA_758: 9126 - K20404 DEPDC5 DEP domain-containing protein 5, at 1,807,319 to 1,813,069
9126
mRNA_759: 9127 - K08486 STX1B_2_3 syntaxin 1B/2/3, at 1,813,341 to 1,815,378
9127
mRNA_760: 9128 - Interpro UDP-glucose-Glycoprotein Glucosyltransferase UDP-glucose-Glycoprotein Glucosyltransferase UDP-glucose-Glycoprotein Glucosyltransferase, at 1,815,773 to 1,818,752
9128
Group
Condition
mRNA
_756
mRNA
_757
mRNA
_758
mRNA
_759
mRNA
_760
9124
9125
9126
9127
9128
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.4
-0.5
N.D.
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
-0.4
+0.0
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.2
-0.5
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
-0.2
-0.2
N.D.
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.2
-0.2
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.4
-0.1
N.D.
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.7
-0.5
-0.1
N.D.
-0.5
auxotrophy
Dropout Complete
+0.3
-0.3
-0.5
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-0.3
-0.6
N.D.
+0.4
growth on ypd
YPD
-0.3
+0.5
-0.3
N.D.
+0.2
growth on oleic acid
YNB Oleic Acid
+0.3
+0.0
-0.3
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.5
-0.3
-0.3
N.D.
+0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.4
+0.3
-0.1
N.D.
-0.1
auxotrophy
YNB Glucose
+0.7
-0.2
-0.3
N.D.
+0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.6
+0.3
-0.0
N.D.
-0.0
growth on oleic acid
YNB Glucose
+0.6
+0.1
-0.2
N.D.
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.2
+0.5
N.D.
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.6
+0.4
-0.0
N.D.
+0.0
growth on ricinoleic acid
YNB Glucose
+0.7
+0.2
-0.2
N.D.
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.0
+0.2
-0.3
N.D.
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.2
-0.0
-0.1
N.D.
+0.4
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