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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9125 and 9126 are separated by 52 nucleotides
9126 and 9127 are separated by 271 nucleotides
9127 and 9128 are separated by 394 nucleotides
9128 and 9129 are separated by 135 nucleotides
mRNA_757: 9125 - K01493 comEB dCMP deaminase, at 1,804,262 to 1,807,266
9125
mRNA_758: 9126 - K20404 DEPDC5 DEP domain-containing protein 5, at 1,807,319 to 1,813,069
9126
mRNA_759: 9127 - K08486 STX1B_2_3 syntaxin 1B/2/3, at 1,813,341 to 1,815,378
9127
mRNA_760: 9128 - Interpro UDP-glucose-Glycoprotein Glucosyltransferase UDP-glucose-Glycoprotein Glucosyltransferase UDP-glucose-Glycoprotein Glucosyltransferase, at 1,815,773 to 1,818,752
9128
mRNA_761: 9129 - KOG2919 Guanine nucleotide-binding protein, at 1,818,888 to 1,820,583
9129
Group
Condition
mRNA
_757
mRNA
_758
mRNA
_759
mRNA
_760
mRNA
_761
9125
9126
9127
9128
9129
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.1
N.D.
-0.5
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.2
N.D.
-0.2
-0.9
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.5
N.D.
-0.4
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
+0.0
N.D.
+0.1
-0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
-0.5
N.D.
+0.3
+0.3
auxotrophy
Dropout Complete
-0.3
-0.5
N.D.
+0.3
+0.3
growth on oleic acid
YNB Oleic Acid
+0.0
-0.3
N.D.
+0.3
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.6
N.D.
+0.4
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.2
N.D.
+0.3
+0.0
auxotrophy
YNB Glucose
-0.2
-0.3
N.D.
+0.5
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.3
N.D.
+0.4
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.1
N.D.
+0.2
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.3
N.D.
+0.4
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.1
N.D.
-0.1
-0.0
growth on ricinoleic acid
YNB Glucose
+0.2
-0.2
N.D.
+0.4
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.0
N.D.
-0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.0
N.D.
+0.0
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.1
N.D.
+0.4
+0.0
growth on oleic acid
YNB Glucose
+0.1
-0.2
N.D.
+0.5
+0.1
growth on ypd
YPD
+0.5
-0.3
N.D.
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.5
N.D.
+0.4
+0.6
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