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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9128 and 9129 are separated by 135 nucleotides
9129 and 9130 are separated by 303 nucleotides
9130 and 9131 are separated by 405 nucleotides
9131 and 9132 are separated by 163 nucleotides
mRNA_760: 9128 - Interpro UDP-glucose-Glycoprotein Glucosyltransferase UDP-glucose-Glycoprotein Glucosyltransferase UDP-glucose-Glycoprotein Glucosyltransferase, at 1,815,773 to 1,818,752
9128
mRNA_761: 9129 - KOG2919 Guanine nucleotide-binding protein, at 1,818,888 to 1,820,583
9129
mRNA_762: 9130 - K11090 LA, SSB lupus La protein, at 1,820,887 to 1,822,873
9130
mRNA_763: 9131 - KOG4686 Predicted sugar transporter, at 1,823,279 to 1,825,136
9131
mRNA_764: 9132 - Hypothetical Protein, at 1,825,300 to 1,826,373
9132
Group
Condition
mRNA
_760
mRNA
_761
mRNA
_762
mRNA
_763
mRNA
_764
9128
9129
9130
9131
9132
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.9
-2.1
-0.3
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.5
-2.5
-0.2
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.6
-0.7
-0.4
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.4
-1.0
+0.3
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.2
-1.5
+0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
+0.0
-1.6
-0.4
+0.4
auxotrophy
Dropout Complete
+0.3
+0.3
-1.1
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.0
-1.0
+0.4
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.0
-0.7
+0.4
+0.5
auxotrophy
YNB Glucose
+0.5
-0.0
-0.9
+0.1
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.3
-0.2
+0.2
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.3
-0.3
-0.4
+0.4
growth on ricinoleic acid
YNB Glucose
+0.4
-0.3
-0.1
+0.5
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.3
-0.1
+0.4
-0.1
growth on oleic acid
YNB Glucose
+0.5
+0.1
-0.0
+0.0
+0.2
growth on ypd
YPD
+0.2
+0.2
-0.3
+0.5
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.4
+0.2
+0.0
-0.0
+0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.1
+0.6
+0.3
+0.4
growth on oleic acid
YNB Oleic Acid
+0.3
-0.2
+1.3
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.3
+0.6
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.6
+0.7
+0.1
-0.2
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