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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9130 and 9131 are separated by 405 nucleotides
9131 and 9132 are separated by 163 nucleotides
9132 and 9133 are separated by 535 nucleotides
9133 and 9134 are separated by 224 nucleotides
mRNA_762: 9130 - K11090 LA, SSB lupus La protein, at 1,820,887 to 1,822,873
9130
mRNA_763: 9131 - KOG4686 Predicted sugar transporter, at 1,823,279 to 1,825,136
9131
mRNA_764: 9132 - Hypothetical Protein, at 1,825,300 to 1,826,373
9132
mRNA_765: 9133 - K12849 PRPF38A pre-mRNA-splicing factor 38A, at 1,826,909 to 1,827,718
9133
mRNA_766: 9134 - K02899 RP-L27, MRPL27, rpmA large subunit ribosomal protein L27, at 1,827,943 to 1,828,724
9134
Group
Condition
mRNA
_762
mRNA
_763
mRNA
_764
mRNA
_765
mRNA
_766
9130
9131
9132
9133
9134
facs on lipid accumulation
Sorted No BODIPY Gate
-2.1
-0.3
+0.2
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-2.5
-0.2
+0.4
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.6
-0.4
+0.4
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
-0.4
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-1.5
+0.1
+0.2
N.D.
N.D.
auxotrophy
Dropout Complete
-1.1
+0.0
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
+0.3
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.0
+0.4
+0.1
N.D.
N.D.
auxotrophy
YNB Glucose
-0.9
+0.1
+0.4
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.4
+0.4
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.2
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.7
+0.4
+0.5
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.0
+0.0
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.4
-0.1
N.D.
N.D.
growth on ypd
YPD
-0.3
+0.5
+0.3
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.0
+0.5
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.1
+0.5
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.7
+0.1
-0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
+0.2
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.6
+0.3
+0.4
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+1.3
+0.0
+0.1
N.D.
N.D.
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