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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9133 and 9134 are separated by 224 nucleotides
9134 and 9135 are separated by 166 nucleotides
9135 and 9136 are separated by 241 nucleotides
9136 and 9137 overlap by 2 nucleotides
mRNA_765: 9133 - K12849 PRPF38A pre-mRNA-splicing factor 38A, at 1,826,909 to 1,827,718
9133
mRNA_766: 9134 - K02899 RP-L27, MRPL27, rpmA large subunit ribosomal protein L27, at 1,827,943 to 1,828,724
9134
mRNA_767: 9135 - K01182 IMA, malL oligo-1,6-glucosidase, at 1,828,891 to 1,831,051
9135
mRNA_768: 9136 - Hypothetical Protein, at 1,831,293 to 1,832,129
9136
mRNA_769: 9137 - K08141 MAL MFS transporter, SP family, general alpha glucoside-H+ symporter, at 1,832,128 to 1,834,944
9137
Group
Condition
mRNA
_765
mRNA
_766
mRNA
_767
mRNA
_768
mRNA
_769
9133
9134
9135
9136
9137
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.4
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.2
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.0
-0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+0.2
-0.3
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.1
-0.3
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.3
-0.0
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.3
-0.1
+0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.3
-0.0
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.3
+0.0
+0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.1
-0.1
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.2
-0.1
+0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.1
-0.1
+0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.0
-0.0
+0.2
auxotrophy
Dropout Complete
N.D.
N.D.
-0.0
-0.0
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.0
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.0
-0.0
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.1
+0.0
+0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.0
+0.1
+0.1
growth on ypd
YPD
N.D.
N.D.
+0.2
-0.0
+0.1
auxotrophy
YNB Glucose
N.D.
N.D.
+0.2
+0.0
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.2
-0.0
+0.2
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