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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9136 and 9137 overlap by 2 nucleotides
9137 and 9138 are separated by 352 nucleotides
9138 and 9139 are separated by 409 nucleotides
9139 and 9140 overlap by 13 nucleotides
mRNA_768: 9136 - Hypothetical Protein, at 1,831,293 to 1,832,129
9136
mRNA_769: 9137 - K08141 MAL MFS transporter, SP family, general alpha glucoside-H+ symporter, at 1,832,128 to 1,834,944
9137
mRNA_770: 9138 - K10765 ALKBH1 alkylated DNA repair protein alkB homolog 1, at 1,835,297 to 1,836,834
9138
mRNA_771: 9139 - KOG0254 Predicted transporter (major facilitator superfamily), at 1,837,244 to 1,837,694
9139
mRNA_772: 9140 - Hypothetical Protein, at 1,837,682 to 1,837,975
9140
Group
Condition
mRNA
_768
mRNA
_769
mRNA
_770
mRNA
_771
mRNA
_772
9136
9137
9138
9139
9140
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.1
-0.6
N.D.
-1.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.1
-0.7
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.1
-0.3
N.D.
-0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.0
-0.3
N.D.
-0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.3
+0.0
N.D.
-0.9
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+0.2
-0.5
N.D.
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.0
+0.1
N.D.
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.2
-0.1
N.D.
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.0
+0.1
N.D.
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.3
-0.3
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.2
-0.3
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.1
-0.1
N.D.
-0.1
growth on ypd
YPD
-0.0
+0.1
+0.2
N.D.
-0.4
growth on ricinoleic acid
YNB Glucose
-0.1
+0.0
+0.6
N.D.
-0.4
auxotrophy
Dropout Complete
-0.0
+0.2
+0.2
N.D.
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.4
+0.0
N.D.
-0.1
growth on oleic acid
YNB Glucose
+0.1
+0.1
-0.2
N.D.
+0.2
growth on oleic acid
YNB Oleic Acid
-0.0
+0.2
-0.3
N.D.
+0.4
auxotrophy
YNB Glucose
+0.0
+0.1
+0.3
N.D.
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.4
-0.1
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.2
+0.2
N.D.
+0.3
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