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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9137 and 9138 are separated by 352 nucleotides
9138 and 9139 are separated by 409 nucleotides
9139 and 9140 overlap by 13 nucleotides
9140 and 9141 are separated by 460 nucleotides
mRNA_769: 9137 - K08141 MAL MFS transporter, SP family, general alpha glucoside-H+ symporter, at 1,832,128 to 1,834,944
9137
mRNA_770: 9138 - K10765 ALKBH1 alkylated DNA repair protein alkB homolog 1, at 1,835,297 to 1,836,834
9138
mRNA_771: 9139 - KOG0254 Predicted transporter (major facilitator superfamily), at 1,837,244 to 1,837,694
9139
mRNA_772: 9140 - Hypothetical Protein, at 1,837,682 to 1,837,975
9140
mRNA_773: 9141 - BLAST alpha,alpha-trehalase [Microbotryum lychnidis-dioicae..., at 1,838,436 to 1,839,062
9141
Group
Condition
mRNA
_769
mRNA
_770
mRNA
_771
mRNA
_772
mRNA
_773
9137
9138
9139
9140
9141
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.6
N.D.
-1.3
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.7
N.D.
-0.4
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.3
N.D.
-0.7
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.3
N.D.
-0.5
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.0
N.D.
-0.9
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.5
N.D.
-0.3
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.1
N.D.
-0.6
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.3
N.D.
-0.5
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.3
N.D.
-0.2
+0.1
growth on ypd
YPD
+0.1
+0.2
N.D.
-0.4
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.0
N.D.
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.1
N.D.
-0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.1
N.D.
-0.3
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.1
N.D.
-0.3
+0.3
auxotrophy
Dropout Complete
+0.2
+0.2
N.D.
-0.3
+0.3
growth on oleic acid
YNB Glucose
+0.1
-0.2
N.D.
+0.2
+0.3
growth on ricinoleic acid
YNB Glucose
+0.0
+0.6
N.D.
-0.4
+0.3
growth on oleic acid
YNB Oleic Acid
+0.2
-0.3
N.D.
+0.4
+0.2
auxotrophy
YNB Glucose
+0.1
+0.3
N.D.
-0.0
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
-0.1
N.D.
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.2
N.D.
+0.3
+0.1
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