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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9140 and 9141 are separated by 460 nucleotides
9141 and 9142 are separated by 1023 nucleotides
9142 and 9143 are separated by 371 nucleotides
9143 and 9144 are separated by 233 nucleotides
mRNA_772: 9140 - Hypothetical Protein, at 1,837,682 to 1,837,975
9140
mRNA_773: 9141 - BLAST alpha,alpha-trehalase [Microbotryum lychnidis-dioicae..., at 1,838,436 to 1,839,062
9141
mRNA_774: 9142 - K17457 PPP1R12C, MBS85 protein phosphatase 1 regulatory subunit 12C, at 1,840,086 to 1,841,880
9142
mRNA_775: 9143 - Hypothetical Protein, at 1,842,252 to 1,843,593
9143
mRNA_776: 9144 - BLAST NADH-ubiquinone oxidoreductase kD subunit [Pseudo..., at 1,843,827 to 1,844,410
9144
Group
Condition
mRNA
_772
mRNA
_773
mRNA
_774
mRNA
_775
mRNA
_776
9140
9141
9142
9143
9144
facs on lipid accumulation
Sorted High BODIPY Gate
-1.3
+0.1
-0.7
+0.3
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.9
-0.4
+0.1
+0.0
N.D.
growth on ricinoleic acid
YNB Glucose
-0.4
+0.3
-1.0
+0.0
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.2
-0.4
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
-0.2
-0.1
-0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.6
-0.2
+0.1
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.7
-0.2
+0.2
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.1
-0.2
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.3
+0.1
+0.2
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.2
+0.1
+0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.3
-1.0
+0.8
N.D.
growth on ypd
YPD
-0.4
+0.0
-0.5
+0.8
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.3
-0.0
-0.0
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.2
-1.1
+0.9
N.D.
auxotrophy
Dropout Complete
-0.3
+0.3
+0.0
+0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
+0.1
+0.2
+0.4
N.D.
growth on oleic acid
YNB Glucose
+0.2
+0.3
-0.8
+0.7
N.D.
growth on oleic acid
YNB Oleic Acid
+0.4
+0.2
-0.4
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.1
+0.4
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.2
+0.4
+0.2
N.D.
auxotrophy
YNB Glucose
-0.0
+0.2
+0.6
-0.1
N.D.
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