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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9141 and 9142 are separated by 1023 nucleotides
9142 and 9143 are separated by 371 nucleotides
9143 and 9144 are separated by 233 nucleotides
9144 and 9145 are separated by 1094 nucleotides
mRNA_773: 9141 - BLAST alpha,alpha-trehalase [Microbotryum lychnidis-dioicae..., at 1,838,436 to 1,839,062
9141
mRNA_774: 9142 - K17457 PPP1R12C, MBS85 protein phosphatase 1 regulatory subunit 12C, at 1,840,086 to 1,841,880
9142
mRNA_775: 9143 - Hypothetical Protein, at 1,842,252 to 1,843,593
9143
mRNA_776: 9144 - BLAST NADH-ubiquinone oxidoreductase kD subunit [Pseudo..., at 1,843,827 to 1,844,410
9144
mRNA_777: 9145 - KOG0054 Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily, at 1,845,505 to 1,850,431
9145
Group
Condition
mRNA
_773
mRNA
_774
mRNA
_775
mRNA
_776
mRNA
_777
9141
9142
9143
9144
9145
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.4
-0.2
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.1
-0.1
N.D.
-0.2
growth on ricinoleic acid
YNB Glucose
+0.3
-1.0
+0.0
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.4
+0.1
+0.0
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.7
+0.3
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.2
-0.0
N.D.
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-1.1
+0.9
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.1
+0.2
N.D.
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.1
+0.1
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.2
+0.1
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
+0.2
-0.4
+0.3
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.0
-0.0
N.D.
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.1
+0.1
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.4
-0.2
N.D.
-0.2
growth on oleic acid
YNB Glucose
+0.3
-0.8
+0.7
N.D.
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-1.0
+0.8
N.D.
+0.1
auxotrophy
Dropout Complete
+0.3
+0.0
+0.1
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.4
+0.2
N.D.
-0.2
growth on ypd
YPD
+0.0
-0.5
+0.8
N.D.
+0.3
auxotrophy
YNB Glucose
+0.2
+0.6
-0.1
N.D.
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.2
+0.4
N.D.
+0.1
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