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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9144 and 9145 are separated by 1094 nucleotides
9145 and 9146 are separated by 292 nucleotides
9146 and 9147 are separated by 138 nucleotides
9147 and 9148 are separated by 633 nucleotides
mRNA_776: 9144 - BLAST NADH-ubiquinone oxidoreductase kD subunit [Pseudo..., at 1,843,827 to 1,844,410
9144
mRNA_777: 9145 - KOG0054 Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily, at 1,845,505 to 1,850,431
9145
mRNA_778: 9146 - K14548 UTP4, CIRH1A U3 small nucleolar RNA-associated protein 4, at 1,850,724 to 1,853,969
9146
mRNA_779: 9147 - Hypothetical Protein, at 1,854,108 to 1,855,117
9147
mRNA_780: 9148 - K15172 SUPT5H, SPT5 transcription elongation factor SPT5, at 1,855,751 to 1,860,182
9148
Group
Condition
mRNA
_776
mRNA
_777
mRNA
_778
mRNA
_779
mRNA
_780
9144
9145
9146
9147
9148
auxotrophy
Dropout Complete
N.D.
-0.2
N.D.
-0.4
N.D.
auxotrophy
YNB Glucose
N.D.
+0.0
N.D.
-0.5
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
N.D.
-0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.0
N.D.
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.2
N.D.
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.2
N.D.
-0.0
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
N.D.
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
N.D.
-0.0
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
N.D.
-0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
N.D.
-0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
N.D.
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.2
N.D.
+0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.2
N.D.
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.1
N.D.
+0.2
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.0
N.D.
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.0
N.D.
+0.3
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.2
N.D.
+0.5
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
N.D.
+0.2
N.D.
growth on oleic acid
YNB Glucose
N.D.
-0.0
N.D.
+0.6
N.D.
growth on ypd
YPD
N.D.
+0.3
N.D.
+0.4
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.1
N.D.
+0.6
N.D.
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