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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9147 and 9148 are separated by 633 nucleotides
9148 and 9149 are separated by 558 nucleotides
9149 and 9150 are separated by 551 nucleotides
9150 and 9151 are separated by 1152 nucleotides
mRNA_779: 9147 - Hypothetical Protein, at 1,854,108 to 1,855,117
9147
mRNA_780: 9148 - K15172 SUPT5H, SPT5 transcription elongation factor SPT5, at 1,855,751 to 1,860,182
9148
mRNA_781: 9149 - K02910 RP-L31e, RPL31 large subunit ribosomal protein L31e, at 1,860,741 to 1,861,371
9149
mRNA_782: 9150 - K02917 RP-L35Ae, RPL35A large subunit ribosomal protein L35Ae, at 1,861,923 to 1,862,958
9150
mRNA_783: 9151 - HMMPfam-Magnesium transporter NIPA-PF05653,SUPERFAMILY--SSF103481, at 1,864,111 to 1,866,017
9151
Group
Condition
mRNA
_779
mRNA
_780
mRNA
_781
mRNA
_782
mRNA
_783
9147
9148
9149
9150
9151
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
N.D.
N.D.
N.D.
-0.8
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
N.D.
N.D.
N.D.
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
N.D.
N.D.
N.D.
-1.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
N.D.
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
N.D.
N.D.
N.D.
-0.5
growth on oleic acid
YNB Oleic Acid
-0.0
N.D.
N.D.
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
N.D.
N.D.
N.D.
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
N.D.
N.D.
N.D.
-0.3
auxotrophy
YNB Glucose
-0.5
N.D.
N.D.
N.D.
+0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.0
N.D.
N.D.
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
N.D.
N.D.
N.D.
-0.2
auxotrophy
Dropout Complete
-0.4
N.D.
N.D.
N.D.
+0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.0
N.D.
N.D.
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.2
N.D.
N.D.
N.D.
+0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.0
N.D.
N.D.
N.D.
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
N.D.
N.D.
+0.4
growth on oleic acid
YNB Glucose
+0.6
N.D.
N.D.
N.D.
-0.3
growth on ricinoleic acid
YNB Glucose
+0.2
N.D.
N.D.
N.D.
+0.4
growth on ypd
YPD
+0.4
N.D.
N.D.
N.D.
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
N.D.
N.D.
N.D.
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
N.D.
N.D.
N.D.
+0.2
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