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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9149 and 9150 are separated by 551 nucleotides
9150 and 9151 are separated by 1152 nucleotides
9151 and 9152 are separated by 315 nucleotides
9152 and 9153 are separated by 513 nucleotides
mRNA_781: 9149 - K02910 RP-L31e, RPL31 large subunit ribosomal protein L31e, at 1,860,741 to 1,861,371
9149
mRNA_782: 9150 - K02917 RP-L35Ae, RPL35A large subunit ribosomal protein L35Ae, at 1,861,923 to 1,862,958
9150
mRNA_783: 9151 - HMMPfam-Magnesium transporter NIPA-PF05653,SUPERFAMILY--SSF103481, at 1,864,111 to 1,866,017
9151
mRNA_784: 9152 - HMMPfam-Uncharacterized alpha/beta hydrolase domain (DUF2235)-PF09994, at 1,866,333 to 1,867,961
9152
mRNA_785: 9153 - K07305 msrB peptide-methionine (R)-S-oxide reductase, at 1,868,475 to 1,869,401
9153
Group
Condition
mRNA
_781
mRNA
_782
mRNA
_783
mRNA
_784
mRNA
_785
9149
9150
9151
9152
9153
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-1.0
-0.5
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.8
-0.3
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.6
-0.1
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.2
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.4
+0.4
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.4
+0.4
-0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.0
+0.0
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.3
+0.7
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.5
+0.2
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.1
-0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.2
-0.2
-0.0
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.3
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.2
+0.4
-0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.4
-0.1
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+0.4
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.3
-0.1
+0.1
auxotrophy
Dropout Complete
N.D.
N.D.
+0.4
+0.2
-0.2
growth on ypd
YPD
N.D.
N.D.
+0.2
+0.4
-0.2
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.4
+0.1
+0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.4
+0.3
-0.1
auxotrophy
YNB Glucose
N.D.
N.D.
+0.4
+0.4
+0.0
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