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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9157 and 9158 are separated by 573 nucleotides
9158 and 9159 are separated by 203 nucleotides
9159 and 9160 are separated by 676 nucleotides
9160 and 9161 are separated by 253 nucleotides
mRNA_789: 9157 - K14459 HEX hexosaminidase, at 1,873,668 to 1,877,392
9157
mRNA_790: 9158 - HMMPfam-C2 domain-PF00168,ProSiteProfiles-C2 domain profile.-PS50004,SMART-Protein kinase C conserved region 2 (CalB)-SM00239,SUPERFAMILY--SSF49562, at 1,877,966 to 1,880,180
9158
mRNA_791: 9159 - HMMPfam-Svf1-like-PF08622,SUPERFAMILY--SSF159245, at 1,880,384 to 1,881,933
9159
mRNA_792: 9160 - SUPERFAMILY--SSF52047, at 1,882,610 to 1,885,727
9160
mRNA_793: 9161 - KOG0374 Serine/threonine specific protein phosphatase PP1, catalytic subunit, at 1,885,981 to 1,887,715
9161
Group
Condition
mRNA
_789
mRNA
_790
mRNA
_791
mRNA
_792
mRNA
_793
9157
9158
9159
9160
9161
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.8
N.D.
-0.3
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.7
N.D.
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.1
N.D.
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.0
N.D.
-0.1
-0.2
auxotrophy
Dropout Complete
-0.4
+0.2
N.D.
-0.0
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.3
N.D.
-0.1
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.1
N.D.
+0.0
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.0
N.D.
+0.2
-0.1
growth on oleic acid
YNB Glucose
-0.3
+0.0
N.D.
-0.1
+0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.4
N.D.
-0.1
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.0
N.D.
+0.1
-0.1
growth on ricinoleic acid
YNB Glucose
-0.1
-0.2
N.D.
+0.1
+0.3
growth on oleic acid
YNB Oleic Acid
-0.4
+0.3
N.D.
-0.2
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.2
N.D.
-0.1
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.2
N.D.
+0.4
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.2
N.D.
-0.0
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.2
N.D.
-0.0
+0.2
auxotrophy
YNB Glucose
-0.1
+0.1
N.D.
+0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.0
N.D.
+0.2
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.0
N.D.
+0.3
+0.3
growth on ypd
YPD
-0.2
+0.5
N.D.
+0.4
+0.3
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