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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9161 and 9162 are separated by 155 nucleotides
9162 and 9163 are separated by 104 nucleotides
9163 and 9164 are separated by 385 nucleotides
9164 and 9165 are separated by 614 nucleotides
mRNA_793: 9161 - KOG0374 Serine/threonine specific protein phosphatase PP1, catalytic subunit, at 1,885,981 to 1,887,715
9161
mRNA_794: 9162 - K14834 NOC3 nucleolar complex protein 3, at 1,887,871 to 1,891,135
9162
mRNA_795: 9163 - KOG0137 Very-long-chain acyl-CoA dehydrogenase, at 1,891,240 to 1,893,546
9163
mRNA_796: 9164 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 1,893,932 to 1,897,116
9164
mRNA_797: 9165 - K02265 COX5B cytochrome c oxidase subunit 5b, at 1,897,731 to 1,898,518
9165
Group
Condition
mRNA
_793
mRNA
_794
mRNA
_795
mRNA
_796
mRNA
_797
9161
9162
9163
9164
9165
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
N.D.
-0.4
-0.4
-0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.3
N.D.
+0.2
-0.0
-0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
N.D.
-0.2
+0.3
-0.7
auxotrophy
Dropout Complete
-0.2
N.D.
+0.0
+0.1
-0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
N.D.
-0.1
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
N.D.
-0.6
-0.2
+0.5
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
N.D.
-0.1
-0.4
+0.3
auxotrophy
YNB Glucose
+0.1
N.D.
+0.2
+0.0
-0.8
auxotrophy
YNB Glucose 75mM Methionine
+0.0
N.D.
+0.2
-0.2
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
N.D.
-0.2
-0.5
+0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
+0.6
+0.1
-0.6
growth on oleic acid
YNB Oleic Acid
+0.4
N.D.
+0.0
+0.1
-0.4
ypd buoyancy
40 hrs High Buoyancy
-0.3
N.D.
+0.4
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
-0.3
-0.1
+0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
+0.4
+0.0
+0.1
growth on ypd
YPD
+0.3
N.D.
+0.1
-0.0
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
N.D.
-0.2
+0.1
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
N.D.
-0.1
+0.1
+0.5
growth on ricinoleic acid
YNB Glucose
+0.3
N.D.
-0.2
+0.3
+0.5
growth on oleic acid
YNB Glucose
+0.4
N.D.
-0.1
+0.5
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
N.D.
+0.0
+0.2
+0.7
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