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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9166 and 9167 are separated by 344 nucleotides
9167 and 9168 are separated by 450 nucleotides
9168 and 9169 are separated by 214 nucleotides
9169 and 9170 are separated by 513 nucleotides
mRNA_798: 9166 - K15376 GPHN gephyrin, at 1,898,956 to 1,901,377
9166
mRNA_799: 9167 - K01893 NARS, asnS asparaginyl-tRNA synthetase, at 1,901,722 to 1,903,948
9167
mRNA_800: 9168 - K10418 DYNLL dynein light chain LC8-type, at 1,904,399 to 1,905,250
9168
mRNA_801: 9169 - SUPERFAMILY--SSF52047, at 1,905,465 to 1,906,798
9169
mRNA_802: 9170 - SUPERFAMILY--SSF52047, at 1,907,312 to 1,908,570
9170
Group
Condition
mRNA
_798
mRNA
_799
mRNA
_800
mRNA
_801
mRNA
_802
9166
9167
9168
9169
9170
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
N.D.
N.D.
+0.3
-1.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
N.D.
N.D.
+0.1
-1.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
N.D.
N.D.
-0.5
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
N.D.
N.D.
-0.1
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
N.D.
N.D.
-0.0
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
N.D.
N.D.
-0.0
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
N.D.
N.D.
+0.1
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.3
N.D.
N.D.
-0.4
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
N.D.
-0.0
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.0
N.D.
N.D.
+0.1
+0.3
auxotrophy
YNB Glucose
+0.2
N.D.
N.D.
-0.1
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
N.D.
N.D.
+0.2
+0.2
auxotrophy
Dropout Complete
+0.1
N.D.
N.D.
-0.2
+0.6
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
N.D.
+0.3
+0.3
growth on oleic acid
YNB Oleic Acid
+0.2
N.D.
N.D.
+0.4
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
N.D.
N.D.
+0.4
+0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
N.D.
+0.2
+0.7
ypd buoyancy
40 hrs High Buoyancy
+0.2
N.D.
N.D.
+0.1
+0.5
growth on oleic acid
YNB Glucose
+0.1
N.D.
N.D.
+0.4
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
N.D.
N.D.
+0.5
+0.6
growth on ypd
YPD
+0.1
N.D.
N.D.
+0.4
+1.6
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