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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9167 and 9168 are separated by 450 nucleotides
9168 and 9169 are separated by 214 nucleotides
9169 and 9170 are separated by 513 nucleotides
9170 and 9171 are separated by 390 nucleotides
mRNA_799: 9167 - K01893 NARS, asnS asparaginyl-tRNA synthetase, at 1,901,722 to 1,903,948
9167
mRNA_800: 9168 - K10418 DYNLL dynein light chain LC8-type, at 1,904,399 to 1,905,250
9168
mRNA_801: 9169 - SUPERFAMILY--SSF52047, at 1,905,465 to 1,906,798
9169
mRNA_802: 9170 - SUPERFAMILY--SSF52047, at 1,907,312 to 1,908,570
9170
mRNA_803: 9171 - HMMPfam-Velvet factor-PF11754, at 1,908,961 to 1,910,410
9171
Group
Condition
mRNA
_799
mRNA
_800
mRNA
_801
mRNA
_802
mRNA
_803
9167
9168
9169
9170
9171
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.1
-0.5
-0.9
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.3
-1.5
+0.0
auxotrophy
Dropout Complete
N.D.
N.D.
-0.2
+0.6
-1.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.1
-1.0
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.0
-0.4
+0.0
auxotrophy
YNB Glucose
N.D.
N.D.
-0.1
+0.3
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.4
+0.2
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+0.4
+0.6
-0.9
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.4
+0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.0
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.0
-0.4
+0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.5
+0.0
+1.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.1
+0.3
+0.2
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.3
+0.3
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.1
+0.5
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.5
+0.6
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.2
+0.2
+0.3
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.4
+0.3
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.2
+0.7
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.1
-0.4
+1.4
growth on ypd
YPD
N.D.
N.D.
+0.4
+1.6
-0.3
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