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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9181 and 9182 are separated by 522 nucleotides
9182 and 9183 are separated by 127 nucleotides
9183 and 9184 are separated by 735 nucleotides
9184 and 9185 are separated by 364 nucleotides
mRNA_813: 9181 - KOG1515 Arylacetamide deacetylase, at 1,934,568 to 1,937,031
9181
mRNA_814: 9182 - K15075 MET18, MMS19 DNA repair/transcription protein MET18/MMS19, at 1,937,554 to 1,941,739
9182
mRNA_815: 9183 - K04555 UBE2G2, UBC7 ubiquitin-conjugating enzyme E2 G2, at 1,941,867 to 1,942,865
9183
mRNA_816: 9184 - KOG0783 Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains, at 1,943,601 to 1,948,343
9184
mRNA_817: 9185 - K02208 CDK8_11 cyclin-dependent kinase 8/11, at 1,948,708 to 1,950,488
9185
Group
Condition
mRNA
_813
mRNA
_814
mRNA
_815
mRNA
_816
mRNA
_817
9181
9182
9183
9184
9185
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
N.D.
-2.5
-0.0
-2.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
N.D.
-3.6
+0.3
-1.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
N.D.
-3.6
+0.1
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
N.D.
-2.2
-0.2
-0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
N.D.
-2.1
+0.1
-0.5
growth on oleic acid
YNB Oleic Acid
+0.2
N.D.
-3.4
+0.1
+0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
N.D.
-1.8
+0.0
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
N.D.
-1.0
-0.1
-0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
-1.4
+0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
N.D.
-1.2
+0.1
-0.2
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
-1.7
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
N.D.
-1.0
+0.1
-0.1
growth on oleic acid
YNB Glucose
+0.2
N.D.
-1.7
+0.1
+0.5
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
N.D.
-0.4
+0.0
-0.7
auxotrophy
YNB Glucose 75mM Methionine
+0.2
N.D.
-2.0
+0.2
+0.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
-1.2
+0.4
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.4
N.D.
-1.6
+0.1
+0.6
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
-0.1
-0.1
-0.3
auxotrophy
YNB Glucose
+0.2
N.D.
-0.5
+0.3
+0.0
growth on ypd
YPD
+0.0
N.D.
+1.0
-0.2
-0.5
auxotrophy
Dropout Complete
+0.4
N.D.
-0.1
-0.1
+0.4
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