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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9182 and 9183 are separated by 127 nucleotides
9183 and 9184 are separated by 735 nucleotides
9184 and 9185 are separated by 364 nucleotides
9185 and 9186 are separated by 158 nucleotides
mRNA_814: 9182 - K15075 MET18, MMS19 DNA repair/transcription protein MET18/MMS19, at 1,937,554 to 1,941,739
9182
mRNA_815: 9183 - K04555 UBE2G2, UBC7 ubiquitin-conjugating enzyme E2 G2, at 1,941,867 to 1,942,865
9183
mRNA_816: 9184 - KOG0783 Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains, at 1,943,601 to 1,948,343
9184
mRNA_817: 9185 - K02208 CDK8_11 cyclin-dependent kinase 8/11, at 1,948,708 to 1,950,488
9185
mRNA_818: 9186 - HMMPfam-PQ loop repeat-PF04193, at 1,950,647 to 1,952,582
9186
Group
Condition
mRNA
_814
mRNA
_815
mRNA
_816
mRNA
_817
mRNA
_818
9182
9183
9184
9185
9186
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-3.6
+0.3
-1.2
-0.8
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-2.5
-0.0
-2.0
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-2.2
-0.2
-0.7
-0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-3.6
+0.1
+0.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.4
+0.0
-0.7
-1.6
growth on oleic acid
YNB Oleic Acid
N.D.
-3.4
+0.1
+0.8
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-1.4
+0.1
-0.2
-0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-2.1
+0.1
-0.5
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-1.0
-0.1
-0.6
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-1.8
+0.0
-0.1
+0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-1.2
+0.1
-0.2
+0.1
growth on oleic acid
YNB Glucose
N.D.
-1.7
+0.1
+0.5
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
-1.7
+0.2
+0.3
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-1.2
+0.4
+0.2
-0.5
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-2.0
+0.2
+0.8
-0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
-0.1
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-1.0
+0.1
-0.1
+0.4
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-1.6
+0.1
+0.6
+0.4
auxotrophy
YNB Glucose
N.D.
-0.5
+0.3
+0.0
+0.3
auxotrophy
Dropout Complete
N.D.
-0.1
-0.1
+0.4
+0.2
growth on ypd
YPD
N.D.
+1.0
-0.2
-0.5
+0.2
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