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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9184 and 9185 are separated by 364 nucleotides
9185 and 9186 are separated by 158 nucleotides
9186 and 9187 are separated by 568 nucleotides
9187 and 9188 are separated by 112 nucleotides
mRNA_816: 9184 - KOG0783 Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains, at 1,943,601 to 1,948,343
9184
mRNA_817: 9185 - K02208 CDK8_11 cyclin-dependent kinase 8/11, at 1,948,708 to 1,950,488
9185
mRNA_818: 9186 - HMMPfam-PQ loop repeat-PF04193, at 1,950,647 to 1,952,582
9186
mRNA_819: 9187 - KOG1810 Cell cycle-associated protein, at 1,953,151 to 1,958,497
9187
mRNA_820: 9188 - K20495 CYP704B1 long-chain fatty acid omega-monooxygenase, at 1,958,610 to 1,960,839
9188
Group
Condition
mRNA
_816
mRNA
_817
mRNA
_818
mRNA
_819
mRNA
_820
9184
9185
9186
9187
9188
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.7
-1.6
+0.2
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-2.0
-0.1
-0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.7
-0.7
+0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-1.2
-0.8
-0.0
+0.6
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.2
-0.8
+0.0
-0.2
growth on ypd
YPD
-0.2
-0.5
+0.2
+0.0
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.6
-0.1
+0.1
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.3
-0.2
+0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.2
+0.1
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.5
+0.3
-0.3
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
+0.2
-0.5
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.1
+0.4
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.1
+0.4
-0.3
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.0
-0.1
-0.1
+0.5
auxotrophy
Dropout Complete
-0.1
+0.4
+0.2
-0.1
+0.2
growth on oleic acid
YNB Glucose
+0.1
+0.5
-0.1
-0.2
+0.6
growth on ricinoleic acid
YNB Glucose
+0.2
+0.3
+0.0
+0.2
+0.4
auxotrophy
YNB Glucose
+0.3
+0.0
+0.3
+0.0
+0.6
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.6
+0.4
+0.1
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.8
-0.0
+0.2
+0.6
growth on oleic acid
YNB Oleic Acid
+0.1
+0.8
+0.2
-0.0
+0.8
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