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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9186 and 9187 are separated by 568 nucleotides
9187 and 9188 are separated by 112 nucleotides
9188 and 9189 are separated by 725 nucleotides
9189 and 9190 are separated by 549 nucleotides
mRNA_818: 9186 - HMMPfam-PQ loop repeat-PF04193, at 1,950,647 to 1,952,582
9186
mRNA_819: 9187 - KOG1810 Cell cycle-associated protein, at 1,953,151 to 1,958,497
9187
mRNA_820: 9188 - K20495 CYP704B1 long-chain fatty acid omega-monooxygenase, at 1,958,610 to 1,960,839
9188
mRNA_821: 9189 - K14301 NUP107, NUP84 nuclear pore complex protein Nup107, at 1,961,565 to 1,964,829
9189
mRNA_822: 9190 - HMMPfam-Sec7 domain-PF01369,HMMPfam-Pleckstrin homology domain-PF15410,ProSiteProfiles-PH domain profile.-PS50003,ProSiteProfiles-SEC7 domain profile.-PS50190,SMART-Sec7 domain-SM00222,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF48425,SUPERFAMILY--SSF50729, at 1,965,379 to 1,971,450
9190
Group
Condition
mRNA
_818
mRNA
_819
mRNA
_820
mRNA
_821
mRNA
_822
9186
9187
9188
9189
9190
ypd buoyancy
40 hrs No Buoyancy Separation
-1.6
+0.2
-0.2
N.D.
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.1
+0.1
N.D.
-0.9
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.1
-0.0
N.D.
-0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-0.2
+0.1
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.8
+0.0
-0.2
N.D.
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
+0.1
+0.1
N.D.
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.8
-0.0
+0.6
N.D.
-0.2
growth on ypd
YPD
+0.2
+0.0
-0.4
N.D.
-0.2
auxotrophy
Dropout Complete
+0.2
-0.1
+0.2
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-0.2
-0.1
N.D.
-0.1
growth on oleic acid
YNB Glucose
-0.1
-0.2
+0.6
N.D.
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.2
+0.1
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
+0.0
+0.2
+0.4
N.D.
-0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.0
-0.1
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.1
+0.5
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.2
+0.6
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.3
+0.2
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.3
+0.4
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.4
+0.1
+0.3
N.D.
-0.1
auxotrophy
YNB Glucose
+0.3
+0.0
+0.6
N.D.
-0.2
growth on oleic acid
YNB Oleic Acid
+0.2
-0.0
+0.8
N.D.
+0.1
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