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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9188 and 9189 are separated by 725 nucleotides
9189 and 9190 are separated by 549 nucleotides
9190 and 9191 are separated by 133 nucleotides
9191 and 9192 are separated by 373 nucleotides
mRNA_820: 9188 - K20495 CYP704B1 long-chain fatty acid omega-monooxygenase, at 1,958,610 to 1,960,839
9188
mRNA_821: 9189 - K14301 NUP107, NUP84 nuclear pore complex protein Nup107, at 1,961,565 to 1,964,829
9189
mRNA_822: 9190 - HMMPfam-Sec7 domain-PF01369,HMMPfam-Pleckstrin homology domain-PF15410,ProSiteProfiles-PH domain profile.-PS50003,ProSiteProfiles-SEC7 domain profile.-PS50190,SMART-Sec7 domain-SM00222,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF48425,SUPERFAMILY--SSF50729, at 1,965,379 to 1,971,450
9190
mRNA_823: 9191 - HMMPfam-Fungal domain of unknown function (DUF1712)-PF08217, at 1,971,584 to 1,974,293
9191
mRNA_824: 9192 - Hypothetical Protein, at 1,974,667 to 1,975,574
9192
Group
Condition
mRNA
_820
mRNA
_821
mRNA
_822
mRNA
_823
mRNA
_824
9188
9189
9190
9191
9192
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
N.D.
-0.2
+0.0
-0.9
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
N.D.
-0.7
-0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
+0.1
-0.2
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
-0.9
+0.3
-0.1
auxotrophy
Dropout Complete
+0.2
N.D.
-0.4
+0.2
-0.5
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
-0.1
-0.2
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.6
N.D.
-0.4
-0.0
-0.6
growth on ypd
YPD
-0.4
N.D.
-0.2
-0.4
+0.7
auxotrophy
YNB Glucose
+0.6
N.D.
-0.2
+0.3
-0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.2
N.D.
+0.3
+0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.3
N.D.
-0.1
+0.2
-0.2
growth on oleic acid
YNB Glucose
+0.6
N.D.
-0.3
+0.0
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
N.D.
-0.1
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
N.D.
+0.1
+0.4
-0.2
growth on ricinoleic acid
YNB Glucose
+0.4
N.D.
-0.5
+0.0
+0.6
growth on oleic acid
YNB Oleic Acid
+0.8
N.D.
+0.1
-0.2
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
N.D.
-0.2
+0.0
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
N.D.
-0.0
+0.0
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
N.D.
-0.1
+0.7
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
N.D.
+0.1
+0.7
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
N.D.
-0.1
+1.0
+0.6
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