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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9189 and 9190 are separated by 549 nucleotides
9190 and 9191 are separated by 133 nucleotides
9191 and 9192 are separated by 373 nucleotides
9192 and 9193 are separated by 469 nucleotides
mRNA_821: 9189 - K14301 NUP107, NUP84 nuclear pore complex protein Nup107, at 1,961,565 to 1,964,829
9189
mRNA_822: 9190 - HMMPfam-Sec7 domain-PF01369,HMMPfam-Pleckstrin homology domain-PF15410,ProSiteProfiles-PH domain profile.-PS50003,ProSiteProfiles-SEC7 domain profile.-PS50190,SMART-Sec7 domain-SM00222,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF48425,SUPERFAMILY--SSF50729, at 1,965,379 to 1,971,450
9190
mRNA_823: 9191 - HMMPfam-Fungal domain of unknown function (DUF1712)-PF08217, at 1,971,584 to 1,974,293
9191
mRNA_824: 9192 - Hypothetical Protein, at 1,974,667 to 1,975,574
9192
mRNA_825: 9193 - HMMPfam-Modifier of rudimentary (Mod(r)) protein-PF07200,ProSiteProfiles-VPS37 C-terminal domain profile.-PS51314,SUPERFAMILY--SSF140111, at 1,976,044 to 1,976,786
9193
Group
Condition
mRNA
_821
mRNA
_822
mRNA
_823
mRNA
_824
mRNA
_825
9189
9190
9191
9192
9193
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.7
-0.1
+0.1
-4.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.9
+0.3
-0.1
-4.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.4
-0.0
-0.6
-3.7
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.1
+0.3
+0.2
-4.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.2
+0.0
+0.4
-4.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.2
+0.0
-0.9
-2.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.0
+0.0
+0.4
-3.1
auxotrophy
YNB Glucose
N.D.
-0.2
+0.3
-0.6
-2.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
+0.4
-0.2
-2.7
growth on ricinoleic acid
YNB Glucose
N.D.
-0.5
+0.0
+0.6
-2.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
+0.7
+0.2
-2.5
auxotrophy
Dropout Complete
N.D.
-0.4
+0.2
-0.5
-0.7
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
+0.2
-0.2
-1.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
-0.2
-0.5
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.1
+0.7
-0.1
-1.7
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
-0.2
-0.2
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
-0.2
+0.2
-0.3
growth on oleic acid
YNB Glucose
N.D.
-0.3
+0.0
-0.1
+0.3
growth on ypd
YPD
N.D.
-0.2
-0.4
+0.7
+0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.3
+0.0
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.1
+1.0
+0.6
-0.8
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