Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 9197 and 9198 are separated by 432 nucleotides9198 and 9199 are separated by 389 nucleotides9199 and 9200 are separated by 19 nucleotides9200 and 9201 are separated by 140 nucleotides mRNA_829: 9197 - HMMPfam-Spc7 kinetochore protein-PF08317,SMART-Spc7 kinetochore protein-SM00787, at 1,984,199 to 1,988,562 9197 mRNA_830: 9198 - K00413 CYC1, CYT1, petC ubiquinol-cytochrome c reductase cytochrome c1 subunit, at 1,988,995 to 1,990,549 9198 mRNA_831: 9199 - K12366 ELMO1, CED12 engulfment and cell motility protein 1, at 1,990,939 to 1,993,710 9199 mRNA_832: 9200 - K08835 OXSR1, STK39 serine/threonine-protein kinase OSR1/STK39, at 1,993,730 to 1,995,894 9200 mRNA_833: 9201 - HMMPfam-Homeobox domain-PF00046,ProSiteProfiles-'Homeobox' domain profile.-PS50071,SMART-Homeodomain-SM00389,SUPERFAMILY--SSF46689, at 1,996,035 to 1,997,724 9201
Group Condition mRNA_829 mRNA_830 mRNA_831 mRNA_832 mRNA_833
9197 9198 9199 9200 9201
growth on ricinoleic acid YNB Methylricinoleic Acid N.D. N.D. -0.5 -0.1 -1.0
auxotrophy Dropout Complete N.D. N.D. -0.4 -0.1 -0.8
growth on oleic acid YNB Glucose N.D. N.D. -0.6 -0.1 -0.5
growth on ypd YPD N.D. N.D. -0.3 +0.2 -1.1
growth on ricinoleic acid YNB Glucose N.D. N.D. -0.6 +0.1 -0.7
auxotrophy YNB Glucose 75mM Arginine N.D. N.D. -0.6 +0.1 -0.6
auxotrophy YNB Glucose 75mM Methionine N.D. N.D. -0.4 +0.1 -0.7
growth on oleic acid YNB Oleic Acid N.D. N.D. -0.4 -0.1 -0.4
auxotrophy YNB Glucose N.D. N.D. -0.5 +0.2 -0.4
growth on ricinoleic acid YNB Ricinoleic Acid N.D. N.D. -0.4 +0.4 -0.7
facs on lipid accumulation Sorted No BODIPY Gate N.D. N.D. -0.4 -0.1 -0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy N.D. N.D. +0.0 -0.2 -0.0
facs on lipid accumulation Sorted Low BODIPY Gate N.D. N.D. +0.2 +0.2 -0.5
buoyancy on lipid accumulation 40 hrs Median Buoyancy N.D. N.D. +0.1 +0.2 -0.1
ypd buoyancy 40 hrs High Buoyancy N.D. N.D. -0.0 +0.2 -0.0
facs on lipid accumulation Sorted High BODIPY Gate N.D. N.D. -0.1 -0.0 +0.3
ypd buoyancy 40 hrs Median Buoyancy N.D. N.D. -0.1 +0.1 +0.2
ypd buoyancy 40 hrs Low Buoyancy N.D. N.D. -0.1 -0.0 +0.4
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation N.D. N.D. +0.5 -0.0 -0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy N.D. N.D. +0.5 -0.1 +0.1
ypd buoyancy 40 hrs No Buoyancy Separation N.D. N.D. +0.3 +0.6 +0.7
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