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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9198 and 9199 are separated by 389 nucleotides
9199 and 9200 are separated by 19 nucleotides
9200 and 9201 are separated by 140 nucleotides
9201 and 9202 are separated by 314 nucleotides
mRNA_830: 9198 - K00413 CYC1, CYT1, petC ubiquinol-cytochrome c reductase cytochrome c1 subunit, at 1,988,995 to 1,990,549
9198
mRNA_831: 9199 - K12366 ELMO1, CED12 engulfment and cell motility protein 1, at 1,990,939 to 1,993,710
9199
mRNA_832: 9200 - K08835 OXSR1, STK39 serine/threonine-protein kinase OSR1/STK39, at 1,993,730 to 1,995,894
9200
mRNA_833: 9201 - HMMPfam-Homeobox domain-PF00046,ProSiteProfiles-'Homeobox' domain profile.-PS50071,SMART-Homeodomain-SM00389,SUPERFAMILY--SSF46689, at 1,996,035 to 1,997,724
9201
mRNA_834: 9202 - HMMPfam-HIT zinc finger-PF04438,ProSiteProfiles-Zinc finger HIT-type profile.-PS51083,SUPERFAMILY--SSF144232, at 1,998,039 to 1,998,977
9202
Group
Condition
mRNA
_830
mRNA
_831
mRNA
_832
mRNA
_833
mRNA
_834
9198
9199
9200
9201
9202
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.5
-0.1
-1.0
N.D.
auxotrophy
Dropout Complete
N.D.
-0.4
-0.1
-0.8
N.D.
growth on oleic acid
YNB Glucose
N.D.
-0.6
-0.1
-0.5
N.D.
growth on ypd
YPD
N.D.
-0.3
+0.2
-1.1
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
-0.6
+0.1
-0.7
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.6
+0.1
-0.6
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.4
+0.1
-0.7
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
-0.4
-0.1
-0.4
N.D.
auxotrophy
YNB Glucose
N.D.
-0.5
+0.2
-0.4
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.4
+0.4
-0.7
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.4
-0.1
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.0
-0.2
-0.0
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.2
+0.2
-0.5
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
+0.2
-0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.0
+0.2
-0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
-0.0
+0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
+0.1
+0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
-0.0
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.5
-0.0
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.5
-0.1
+0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.3
+0.6
+0.7
N.D.
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