Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 9199 and 9200 are separated by 19 nucleotides9200 and 9201 are separated by 140 nucleotides9201 and 9202 are separated by 314 nucleotides9202 and 9203 are separated by 180 nucleotides mRNA_831: 9199 - K12366 ELMO1, CED12 engulfment and cell motility protein 1, at 1,990,939 to 1,993,710 9199 mRNA_832: 9200 - K08835 OXSR1, STK39 serine/threonine-protein kinase OSR1/STK39, at 1,993,730 to 1,995,894 9200 mRNA_833: 9201 - HMMPfam-Homeobox domain-PF00046,ProSiteProfiles-'Homeobox' domain profile.-PS50071,SMART-Homeodomain-SM00389,SUPERFAMILY--SSF46689, at 1,996,035 to 1,997,724 9201 mRNA_834: 9202 - HMMPfam-HIT zinc finger-PF04438,ProSiteProfiles-Zinc finger HIT-type profile.-PS51083,SUPERFAMILY--SSF144232, at 1,998,039 to 1,998,977 9202 mRNA_835: 9203 - K16365 SGTA small glutamine-rich tetratricopeptide repeat-containing protein alpha, at 1,999,158 to 2,000,866 9203
Group Condition mRNA_831 mRNA_832 mRNA_833 mRNA_834 mRNA_835
9199 9200 9201 9202 9203
growth on ricinoleic acid YNB Methylricinoleic Acid -0.5 -0.1 -1.0 N.D. -0.1
growth on oleic acid YNB Glucose -0.6 -0.1 -0.5 N.D. -0.2
growth on oleic acid YNB Oleic Acid -0.4 -0.1 -0.4 N.D. -0.5
facs on lipid accumulation Sorted No BODIPY Gate -0.4 -0.1 -0.2 N.D. -0.6
growth on ricinoleic acid YNB Glucose -0.6 +0.1 -0.7 N.D. -0.1
growth on ypd YPD -0.3 +0.2 -1.1 N.D. -0.0
growth on ricinoleic acid YNB Ricinoleic Acid -0.4 +0.4 -0.7 N.D. -0.4
auxotrophy Dropout Complete -0.4 -0.1 -0.8 N.D. +0.3
auxotrophy YNB Glucose 75mM Arginine -0.6 +0.1 -0.6 N.D. +0.3
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.0 -0.2 -0.0 N.D. -0.6
auxotrophy YNB Glucose 75mM Methionine -0.4 +0.1 -0.7 N.D. +0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.1 +0.2 -0.1 N.D. -0.5
facs on lipid accumulation Sorted Low BODIPY Gate +0.2 +0.2 -0.5 N.D. -0.1
auxotrophy YNB Glucose -0.5 +0.2 -0.4 N.D. +0.6
facs on lipid accumulation Sorted High BODIPY Gate -0.1 -0.0 +0.3 N.D. -0.1
ypd buoyancy 40 hrs Median Buoyancy -0.1 +0.1 +0.2 N.D. -0.1
ypd buoyancy 40 hrs Low Buoyancy -0.1 -0.0 +0.4 N.D. -0.1
ypd buoyancy 40 hrs High Buoyancy -0.0 +0.2 -0.0 N.D. +0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.5 -0.0 -0.1 N.D. -0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.5 -0.1 +0.1 N.D. +0.1
ypd buoyancy 40 hrs No Buoyancy Separation +0.3 +0.6 +0.7 N.D. -0.5
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