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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9200 and 9201 are separated by 140 nucleotides
9201 and 9202 are separated by 314 nucleotides
9202 and 9203 are separated by 180 nucleotides
9203 and 9204 are separated by 292 nucleotides
mRNA_832: 9200 - K08835 OXSR1, STK39 serine/threonine-protein kinase OSR1/STK39, at 1,993,730 to 1,995,894
9200
mRNA_833: 9201 - HMMPfam-Homeobox domain-PF00046,ProSiteProfiles-'Homeobox' domain profile.-PS50071,SMART-Homeodomain-SM00389,SUPERFAMILY--SSF46689, at 1,996,035 to 1,997,724
9201
mRNA_834: 9202 - HMMPfam-HIT zinc finger-PF04438,ProSiteProfiles-Zinc finger HIT-type profile.-PS51083,SUPERFAMILY--SSF144232, at 1,998,039 to 1,998,977
9202
mRNA_835: 9203 - K16365 SGTA small glutamine-rich tetratricopeptide repeat-containing protein alpha, at 1,999,158 to 2,000,866
9203
mRNA_836: 9204 - K17387 KIF23 kinesin family member 23, at 2,001,159 to 2,005,251
9204
Group
Condition
mRNA
_832
mRNA
_833
mRNA
_834
mRNA
_835
mRNA
_836
9200
9201
9202
9203
9204
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-0.7
N.D.
-0.4
-1.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-1.0
N.D.
-0.1
-0.6
growth on ricinoleic acid
YNB Glucose
+0.1
-0.7
N.D.
-0.1
-0.6
growth on ypd
YPD
+0.2
-1.1
N.D.
-0.0
-0.1
auxotrophy
Dropout Complete
-0.1
-0.8
N.D.
+0.3
-0.4
growth on oleic acid
YNB Glucose
-0.1
-0.5
N.D.
-0.2
-0.0
growth on oleic acid
YNB Oleic Acid
-0.1
-0.4
N.D.
-0.5
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.0
N.D.
-0.6
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.1
N.D.
-0.5
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.7
N.D.
+0.2
-0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.6
N.D.
+0.3
-0.5
auxotrophy
YNB Glucose
+0.2
-0.4
N.D.
+0.6
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.2
N.D.
-0.6
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.1
N.D.
-0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.5
N.D.
-0.1
+0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.4
N.D.
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.1
N.D.
+0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.0
N.D.
+0.1
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.6
+0.7
N.D.
-0.5
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.2
N.D.
-0.1
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.3
N.D.
-0.1
+0.5
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