Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 9200 and 9201 are separated by 140 nucleotides9201 and 9202 are separated by 314 nucleotides9202 and 9203 are separated by 180 nucleotides9203 and 9204 are separated by 292 nucleotides mRNA_832: 9200 - K08835 OXSR1, STK39 serine/threonine-protein kinase OSR1/STK39, at 1,993,730 to 1,995,894 9200 mRNA_833: 9201 - HMMPfam-Homeobox domain-PF00046,ProSiteProfiles-'Homeobox' domain profile.-PS50071,SMART-Homeodomain-SM00389,SUPERFAMILY--SSF46689, at 1,996,035 to 1,997,724 9201 mRNA_834: 9202 - HMMPfam-HIT zinc finger-PF04438,ProSiteProfiles-Zinc finger HIT-type profile.-PS51083,SUPERFAMILY--SSF144232, at 1,998,039 to 1,998,977 9202 mRNA_835: 9203 - K16365 SGTA small glutamine-rich tetratricopeptide repeat-containing protein alpha, at 1,999,158 to 2,000,866 9203 mRNA_836: 9204 - K17387 KIF23 kinesin family member 23, at 2,001,159 to 2,005,251 9204
Group Condition mRNA_832 mRNA_833 mRNA_834 mRNA_835 mRNA_836
9200 9201 9202 9203 9204
growth on ricinoleic acid YNB Ricinoleic Acid +0.4 -0.7 N.D. -0.4 -1.6
growth on ricinoleic acid YNB Methylricinoleic Acid -0.1 -1.0 N.D. -0.1 -0.6
growth on ricinoleic acid YNB Glucose +0.1 -0.7 N.D. -0.1 -0.6
growth on ypd YPD +0.2 -1.1 N.D. -0.0 -0.1
auxotrophy Dropout Complete -0.1 -0.8 N.D. +0.3 -0.4
growth on oleic acid YNB Glucose -0.1 -0.5 N.D. -0.2 -0.0
growth on oleic acid YNB Oleic Acid -0.1 -0.4 N.D. -0.5 +0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.2 -0.0 N.D. -0.6 +0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.2 -0.1 N.D. -0.5 -0.3
auxotrophy YNB Glucose 75mM Methionine +0.1 -0.7 N.D. +0.2 -0.4
auxotrophy YNB Glucose 75mM Arginine +0.1 -0.6 N.D. +0.3 -0.5
auxotrophy YNB Glucose +0.2 -0.4 N.D. +0.6 -0.6
facs on lipid accumulation Sorted No BODIPY Gate -0.1 -0.2 N.D. -0.6 +0.6
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.0 -0.1 N.D. -0.1 +0.1
facs on lipid accumulation Sorted Low BODIPY Gate +0.2 -0.5 N.D. -0.1 +0.6
ypd buoyancy 40 hrs Low Buoyancy -0.0 +0.4 N.D. -0.1 +0.0
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.1 +0.1 N.D. +0.1 +0.2
ypd buoyancy 40 hrs High Buoyancy +0.2 -0.0 N.D. +0.1 +0.1
ypd buoyancy 40 hrs No Buoyancy Separation +0.6 +0.7 N.D. -0.5 -0.3
ypd buoyancy 40 hrs Median Buoyancy +0.1 +0.2 N.D. -0.1 +0.3
facs on lipid accumulation Sorted High BODIPY Gate -0.0 +0.3 N.D. -0.1 +0.5
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