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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9213 and 9214 are separated by 774 nucleotides
9214 and 9215 are separated by 265 nucleotides
9215 and 9216 are separated by 477 nucleotides
9216 and 9217 are separated by 173 nucleotides
mRNA_845: 9213 - KOG3346 Phosphatidylethanolamine binding protein, at 2,025,421 to 2,026,759
9213
mRNA_846: 9214 - KOG2710 Rho GTPase-activating protein, at 2,027,534 to 2,029,466
9214
mRNA_847: 9215 - HMMPfam-Amino acid permease-PF13520, at 2,029,732 to 2,032,618
9215
mRNA_848: 9216 - K17989 SDS, SDH, CHA1 L-serine/L-threonine ammonia-lyase, at 2,033,096 to 2,034,366
9216
mRNA_849: 9217 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 2,034,540 to 2,035,724
9217
Group
Condition
mRNA
_845
mRNA
_846
mRNA
_847
mRNA
_848
mRNA
_849
9213
9214
9215
9216
9217
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.1
-0.2
-0.4
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.8
+0.0
-0.6
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.5
-0.4
+0.0
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.7
+0.3
-0.8
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.9
-0.2
+0.2
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.2
-0.2
-0.0
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.0
+0.2
-0.2
-0.4
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.0
+0.3
-0.0
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.2
+0.2
+0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.0
+0.1
+0.1
-0.2
growth on ricinoleic acid
YNB Glucose
+0.1
+0.0
+0.1
+0.1
-0.1
growth on ypd
YPD
-0.2
+0.4
+0.0
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.8
-0.4
-0.3
+0.5
growth on oleic acid
YNB Oleic Acid
+0.0
-0.0
-0.0
+0.7
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.2
+0.2
+0.1
-0.2
auxotrophy
Dropout Complete
+0.3
-0.4
+0.1
+0.1
+0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.2
+0.1
+0.1
+0.5
growth on oleic acid
YNB Glucose
-0.0
-0.0
+0.1
+0.7
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.5
-0.1
+0.8
+0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.3
+0.2
+0.2
+0.4
auxotrophy
YNB Glucose
+0.2
-0.1
+0.0
+0.2
+0.6
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