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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9214 and 9215 are separated by 265 nucleotides
9215 and 9216 are separated by 477 nucleotides
9216 and 9217 are separated by 173 nucleotides
9217 and 9218 are separated by 1141 nucleotides
mRNA_846: 9214 - KOG2710 Rho GTPase-activating protein, at 2,027,534 to 2,029,466
9214
mRNA_847: 9215 - HMMPfam-Amino acid permease-PF13520, at 2,029,732 to 2,032,618
9215
mRNA_848: 9216 - K17989 SDS, SDH, CHA1 L-serine/L-threonine ammonia-lyase, at 2,033,096 to 2,034,366
9216
mRNA_849: 9217 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 2,034,540 to 2,035,724
9217
mRNA_850: 9218 - SUPERFAMILY--SSF52047, at 2,036,866 to 2,038,448
9218
Group
Condition
mRNA
_846
mRNA
_847
mRNA
_848
mRNA
_849
mRNA
_850
9214
9215
9216
9217
9218
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.2
-0.4
-0.6
-0.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.2
-0.0
-0.4
-0.8
facs on lipid accumulation
Sorted No BODIPY Gate
-0.8
+0.0
-0.6
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-0.4
+0.0
+0.2
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.2
-0.2
-0.4
-0.4
auxotrophy
Dropout Complete
-0.4
+0.1
+0.1
+0.5
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.2
+0.1
-0.2
-0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.9
-0.2
+0.2
+0.4
+0.4
growth on ricinoleic acid
YNB Glucose
+0.0
+0.1
+0.1
-0.1
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.2
+0.1
-0.2
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.3
-0.0
-0.3
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.1
+0.1
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.2
+0.2
+0.4
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
+0.3
-0.8
+0.4
+1.0
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.1
+0.1
+0.5
-0.1
growth on oleic acid
YNB Oleic Acid
-0.0
-0.0
+0.7
-0.4
+0.4
growth on oleic acid
YNB Glucose
-0.0
+0.1
+0.7
-0.1
+0.2
growth on ypd
YPD
+0.4
+0.0
-0.1
+0.3
+0.3
auxotrophy
YNB Glucose
-0.1
+0.0
+0.2
+0.6
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
-0.1
+0.8
+0.5
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.8
-0.4
-0.3
+0.5
+1.1
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