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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9217 and 9218 are separated by 1141 nucleotides
9218 and 9219 are separated by 969 nucleotides
9219 and 9220 are separated by 73 nucleotides
9220 and 9221 are separated by 308 nucleotides
mRNA_849: 9217 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 2,034,540 to 2,035,724
9217
mRNA_850: 9218 - SUPERFAMILY--SSF52047, at 2,036,866 to 2,038,448
9218
mRNA_851: 9219 - HMMPfam-Lipase (class 3)-PF01764,SUPERFAMILY--SSF53474, at 2,039,418 to 2,042,658
9219
mRNA_852: 9220 - K01923 purC phosphoribosylaminoimidazole-succinocarboxamide synthase, at 2,042,732 to 2,043,876
9220
mRNA_853: 9221 - K13125 NOSIP nitric oxide synthase-interacting protein, at 2,044,185 to 2,045,369
9221
Group
Condition
mRNA
_849
mRNA
_850
mRNA
_851
mRNA
_852
mRNA
_853
9217
9218
9219
9220
9221
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-0.9
-0.5
N.D.
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.8
+0.2
N.D.
+0.0
growth on oleic acid
YNB Glucose
-0.1
+0.2
+0.0
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.2
-0.2
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.3
-0.5
N.D.
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-0.4
+0.3
N.D.
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.6
+0.3
N.D.
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.2
+0.2
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.3
+0.3
N.D.
-0.6
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.1
-0.0
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.1
+0.1
N.D.
+0.0
growth on oleic acid
YNB Oleic Acid
-0.4
+0.4
+0.1
N.D.
-0.0
auxotrophy
Dropout Complete
+0.5
-0.4
+0.4
N.D.
-0.4
growth on ricinoleic acid
YNB Glucose
-0.1
-0.0
+0.2
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
+0.5
-0.5
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.4
-0.4
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.5
-0.1
+0.4
N.D.
-0.3
auxotrophy
YNB Glucose
+0.6
+0.2
+0.3
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
+1.1
-0.4
N.D.
-0.3
growth on ypd
YPD
+0.3
+0.3
-0.2
N.D.
+0.7
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
+1.0
-0.1
N.D.
+0.2
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