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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9218 and 9219 are separated by 969 nucleotides
9219 and 9220 are separated by 73 nucleotides
9220 and 9221 are separated by 308 nucleotides
9221 and 9222 are separated by 75 nucleotides
mRNA_850: 9218 - SUPERFAMILY--SSF52047, at 2,036,866 to 2,038,448
9218
mRNA_851: 9219 - HMMPfam-Lipase (class 3)-PF01764,SUPERFAMILY--SSF53474, at 2,039,418 to 2,042,658
9219
mRNA_852: 9220 - K01923 purC phosphoribosylaminoimidazole-succinocarboxamide synthase, at 2,042,732 to 2,043,876
9220
mRNA_853: 9221 - K13125 NOSIP nitric oxide synthase-interacting protein, at 2,044,185 to 2,045,369
9221
mRNA_854: 9222 - K01620 ltaE threonine aldolase, at 2,045,445 to 2,046,969
9222
Group
Condition
mRNA
_850
mRNA
_851
mRNA
_852
mRNA
_853
mRNA
_854
9218
9219
9220
9221
9222
ypd buoyancy
40 hrs No Buoyancy Separation
-0.9
-0.5
N.D.
+0.0
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.2
N.D.
-0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.8
+0.2
N.D.
+0.0
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
+0.3
N.D.
+0.3
-0.3
auxotrophy
Dropout Complete
-0.4
+0.4
N.D.
-0.4
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.3
N.D.
-0.6
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.5
N.D.
-0.3
+0.1
growth on oleic acid
YNB Glucose
+0.2
+0.0
N.D.
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.4
N.D.
+0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.0
N.D.
-0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
N.D.
+0.0
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.2
N.D.
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
-0.5
N.D.
+0.0
+0.2
growth on ricinoleic acid
YNB Glucose
-0.0
+0.2
N.D.
+0.3
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.4
N.D.
-0.3
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
+0.3
N.D.
+0.3
+0.2
auxotrophy
YNB Glucose
+0.2
+0.3
N.D.
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.1
-0.4
N.D.
-0.3
+0.1
growth on oleic acid
YNB Oleic Acid
+0.4
+0.1
N.D.
-0.0
+0.0
growth on ypd
YPD
+0.3
-0.2
N.D.
+0.7
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+1.0
-0.1
N.D.
+0.2
+0.2
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