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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9222 and 9223 are separated by 286 nucleotides
9223 and 9224 are separated by 172 nucleotides
9224 and 9225 are separated by 165 nucleotides
9225 and 9226 are separated by 504 nucleotides
mRNA_854: 9222 - K01620 ltaE threonine aldolase, at 2,045,445 to 2,046,969
9222
mRNA_855: 9223 - BLAST Phosphoribosyltransferase C-terminal [Ceraceosorus bo..., at 2,047,256 to 2,049,795
9223
mRNA_856: 9224 - KOG0828 Predicted E3 ubiquitin ligase, at 2,049,968 to 2,053,108
9224
mRNA_857: 9225 - K14565 NOP58 nucleolar protein 58, at 2,053,274 to 2,055,374
9225
mRNA_858: 9226 - K10599 PRPF19, PRP19 pre-mRNA-processing factor 19, at 2,055,879 to 2,057,799
9226
Group
Condition
mRNA
_854
mRNA
_855
mRNA
_856
mRNA
_857
mRNA
_858
9222
9223
9224
9225
9226
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.1
-0.5
N.D.
-3.3
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.1
-1.7
N.D.
-2.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.2
-1.3
N.D.
-2.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.0
+0.3
N.D.
-4.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.1
+0.8
N.D.
-3.6
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.2
-0.4
N.D.
-1.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.0
+0.0
N.D.
-2.1
growth on oleic acid
YNB Glucose
+0.1
-0.1
-0.5
N.D.
-1.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.0
+0.0
N.D.
-1.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.3
-1.7
N.D.
+0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.0
+0.1
N.D.
-1.2
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.0
-1.1
N.D.
-0.3
growth on ricinoleic acid
YNB Glucose
-0.2
-0.1
-0.8
N.D.
+0.6
auxotrophy
YNB Glucose
+0.2
-0.1
-1.2
N.D.
+0.6
growth on oleic acid
YNB Oleic Acid
+0.0
-0.1
-0.1
N.D.
+0.1
auxotrophy
Dropout Complete
+0.1
-0.0
-0.8
N.D.
+0.9
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-0.3
-0.4
N.D.
+1.4
growth on ypd
YPD
+0.2
-0.0
-1.1
N.D.
+2.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.2
-0.5
N.D.
+1.9
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.2
-0.8
N.D.
+3.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.0
+0.2
N.D.
+2.1
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