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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9224 and 9225 are separated by 165 nucleotides
9225 and 9226 are separated by 504 nucleotides
9226 and 9227 are separated by 180 nucleotides
9227 and 9228 are separated by 212 nucleotides
mRNA_856: 9224 - KOG0828 Predicted E3 ubiquitin ligase, at 2,049,968 to 2,053,108
9224
mRNA_857: 9225 - K14565 NOP58 nucleolar protein 58, at 2,053,274 to 2,055,374
9225
mRNA_858: 9226 - K10599 PRPF19, PRP19 pre-mRNA-processing factor 19, at 2,055,879 to 2,057,799
9226
mRNA_859: 9227 - KOG1032 Uncharacterized conserved protein, contains GRAM domain, at 2,057,980 to 2,061,220
9227
mRNA_860: 9228 - HMMPfam-PX domain-PF00787,HMMPfam-BAR domain-PF03114,ProSiteProfiles-PX domain profile.-PS50195,SMART-PhoX homologous domain, present in p47phox and p40phox.-SM00312,SUPERFAMILY--SSF103657,SUPERFAMILY--SSF64268, at 2,061,433 to 2,063,574
9228
Group
Condition
mRNA
_856
mRNA
_857
mRNA
_858
mRNA
_859
mRNA
_860
9224
9225
9226
9227
9228
auxotrophy
YNB Glucose 75mM Arginine
-1.7
N.D.
-2.4
-0.1
-2.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
N.D.
-3.3
+0.0
-2.1
facs on lipid accumulation
Sorted No BODIPY Gate
-1.3
N.D.
-2.2
+0.3
-1.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
N.D.
-1.9
+0.1
-1.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.7
N.D.
+0.6
-0.1
-2.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.8
N.D.
-3.6
+0.3
-0.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
N.D.
-2.1
+0.0
-1.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
N.D.
-4.0
+0.2
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-1.1
N.D.
-0.3
-0.1
-1.5
growth on oleic acid
YNB Glucose
-0.5
N.D.
-1.4
-0.2
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
N.D.
-1.5
-0.1
-0.7
growth on ricinoleic acid
YNB Glucose
-0.8
N.D.
+0.6
-0.1
-1.9
auxotrophy
YNB Glucose
-1.2
N.D.
+0.6
-0.1
-1.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
-1.2
+0.3
-0.9
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
+0.1
-0.3
-0.5
auxotrophy
Dropout Complete
-0.8
N.D.
+0.9
-0.3
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
N.D.
+1.4
+0.0
-0.2
growth on ypd
YPD
-1.1
N.D.
+2.0
+0.0
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.5
N.D.
+1.9
-0.1
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.2
N.D.
+2.1
+0.1
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.8
N.D.
+3.1
+0.2
+0.6
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