Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
9226 and 9227 are separated by 180 nucleotides
9227 and 9228 are separated by 212 nucleotides
9228 and 9229 are separated by 217 nucleotides
9229 and 9230 are separated by 285 nucleotides
mRNA_858: 9226 - K10599 PRPF19, PRP19 pre-mRNA-processing factor 19, at 2,055,879 to 2,057,799
9226
mRNA_859: 9227 - KOG1032 Uncharacterized conserved protein, contains GRAM domain, at 2,057,980 to 2,061,220
9227
mRNA_860: 9228 - HMMPfam-PX domain-PF00787,HMMPfam-BAR domain-PF03114,ProSiteProfiles-PX domain profile.-PS50195,SMART-PhoX homologous domain, present in p47phox and p40phox.-SM00312,SUPERFAMILY--SSF103657,SUPERFAMILY--SSF64268, at 2,061,433 to 2,063,574
9228
mRNA_861: 9229 - K03513 POLM DNA polymerase mu, at 2,063,792 to 2,065,447
9229
mRNA_862: 9230 - KOG2867 Phosphotyrosyl phosphatase activator, at 2,065,733 to 2,067,114
9230
Group
Condition
mRNA
_858
mRNA
_859
mRNA
_860
mRNA
_861
mRNA
_862
9226
9227
9228
9229
9230
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-3.3
+0.0
-2.1
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-2.4
-0.1
-2.0
-0.3
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-3.6
+0.3
-0.9
+0.4
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-4.0
+0.2
+0.3
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-2.1
+0.0
-1.3
+0.2
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.9
+0.1
-1.8
+0.2
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.1
-1.5
-0.7
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-2.2
+0.3
-1.0
-0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
-0.1
-2.4
-0.1
-0.2
growth on oleic acid
YNB Glucose
-1.4
-0.2
-0.7
+0.2
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.5
-0.1
-0.7
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.2
+0.3
-0.9
+0.1
-0.3
growth on ricinoleic acid
YNB Glucose
+0.6
-0.1
-1.9
+0.2
-0.3
auxotrophy
YNB Glucose
+0.6
-0.1
-1.0
-0.4
-0.1
auxotrophy
Dropout Complete
+0.9
-0.3
-0.4
-0.3
-0.4
growth on oleic acid
YNB Oleic Acid
+0.1
-0.3
-0.5
+0.4
+0.1
growth on ypd
YPD
+2.0
+0.0
+0.2
-0.2
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+1.9
-0.1
-0.0
-0.3
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+1.4
+0.0
-0.2
+0.5
+0.4
ypd buoyancy
40 hrs Median Buoyancy
+2.1
+0.1
-0.0
-0.0
+0.3
ypd buoyancy
40 hrs High Buoyancy
+3.1
+0.2
+0.6
-0.1
+0.1
remove
mRNA_858
plot
remove
mRNA_859
plot
remove
mRNA_860
remove
mRNA_861
plot
remove
mRNA_862
plot