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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9228 and 9229 are separated by 217 nucleotides
9229 and 9230 are separated by 285 nucleotides
9230 and 9231 are separated by 610 nucleotides
9231 and 9232 are separated by 385 nucleotides
mRNA_860: 9228 - HMMPfam-PX domain-PF00787,HMMPfam-BAR domain-PF03114,ProSiteProfiles-PX domain profile.-PS50195,SMART-PhoX homologous domain, present in p47phox and p40phox.-SM00312,SUPERFAMILY--SSF103657,SUPERFAMILY--SSF64268, at 2,061,433 to 2,063,574
9228
mRNA_861: 9229 - K03513 POLM DNA polymerase mu, at 2,063,792 to 2,065,447
9229
mRNA_862: 9230 - KOG2867 Phosphotyrosyl phosphatase activator, at 2,065,733 to 2,067,114
9230
mRNA_863: 9231 - K11254 H4 histone H4, at 2,067,725 to 2,068,182
9231
mRNA_864: 9232 - K11253 H3 histone H3, at 2,068,568 to 2,069,276
9232
Group
Condition
mRNA
_860
mRNA
_861
mRNA
_862
mRNA
_863
mRNA
_864
9228
9229
9230
9231
9232
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
+0.0
+0.2
-0.9
-2.3
auxotrophy
YNB Glucose 75mM Arginine
-2.0
-0.3
-0.3
+0.0
-0.9
growth on ricinoleic acid
YNB Glucose
-1.9
+0.2
-0.3
-0.5
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-2.1
+0.1
-0.2
-0.1
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-1.0
-0.1
+0.2
+0.1
-2.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-2.4
-0.1
-0.2
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.3
+0.2
-0.2
+0.3
-1.6
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.8
+0.2
+0.1
+0.1
-0.9
auxotrophy
Dropout Complete
-0.4
-0.3
-0.4
+0.2
-1.3
auxotrophy
YNB Glucose 75mM Methionine
-1.5
-0.7
-0.3
+0.3
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.5
+0.4
-0.8
-1.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.9
+0.1
-0.3
+0.1
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.9
+0.4
-0.3
-0.1
-0.6
auxotrophy
YNB Glucose
-1.0
-0.4
-0.1
+0.4
-0.1
growth on oleic acid
YNB Glucose
-0.7
+0.2
-0.0
-0.1
-0.5
growth on ypd
YPD
+0.2
-0.2
-0.3
+0.2
-0.7
ypd buoyancy
40 hrs High Buoyancy
+0.6
-0.1
+0.1
+0.2
-1.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.1
+0.0
+0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.0
+0.3
+0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.3
+0.2
+0.4
+0.2
growth on oleic acid
YNB Oleic Acid
-0.5
+0.4
+0.1
+0.6
+0.0
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