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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9232 and 9233 are separated by 344 nucleotides
9233 and 9234 are separated by 265 nucleotides
9234 and 9235 are separated by 510 nucleotides
9235 and 9236 are separated by 412 nucleotides
mRNA_864: 9232 - K11253 H3 histone H3, at 2,068,568 to 2,069,276
9232
mRNA_865: 9233 - Hypothetical Protein, at 2,069,621 to 2,070,853
9233
mRNA_866: 9234 - HMMPfam-Cryptococcal mannosyltransferase 1-PF11735, at 2,071,119 to 2,072,862
9234
mRNA_867: 9235 - K17808 ZIM17, DNLZ, Tim15 mitochondrial protein import protein ZIM17, at 2,073,373 to 2,073,740
9235
mRNA_868: 9236 - K14782 AATF, BFR2 protein AATF/BFR2, at 2,074,153 to 2,076,198
9236
Group
Condition
mRNA
_864
mRNA
_865
mRNA
_866
mRNA
_867
mRNA
_868
9232
9233
9234
9235
9236
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.6
-0.1
-1.4
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-2.3
-0.0
+0.1
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-2.0
-0.1
-0.0
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-1.5
-0.3
+0.4
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.9
-0.1
-0.3
N.D.
N.D.
auxotrophy
Dropout Complete
-1.3
+0.1
-0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
+0.2
-0.9
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
-0.1
-0.4
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.4
-0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
+0.2
-0.6
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-1.0
+0.2
-0.0
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.6
+0.3
-0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.9
+0.3
+0.3
N.D.
N.D.
auxotrophy
YNB Glucose
-0.1
-0.1
-0.1
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.5
+0.1
+0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.2
-0.0
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.3
-0.3
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.3
+0.1
N.D.
N.D.
growth on ypd
YPD
-0.7
+0.9
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.2
+0.2
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.0
+0.3
+0.6
N.D.
N.D.
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