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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9239 and 9240 are separated by 19 nucleotides
9240 and 9241 are separated by 284 nucleotides
9241 and 9242 are separated by 329 nucleotides
9242 and 9243 are separated by 25 nucleotides
mRNA_871: 9239 - BLAST lanosterol synthase [Microbotryum lychnidis-dioicae p..., at 2,080,475 to 2,080,915
9239
mRNA_872: 9240 - K01852 LSS, ERG7 lanosterol synthase, at 2,080,935 to 2,083,844
9240
mRNA_873: 9241 - K17497 PMM phosphomannomutase, at 2,084,129 to 2,085,860
9241
mRNA_874: 9242 - BLAST Pc13g07060 [Penicillium rubens Wisconsin 54-1255], at 2,086,190 to 2,086,635
9242
mRNA_875: 9243 - KOG2401 Predicted MutS-related protein involved in mismatch repair, at 2,086,661 to 2,088,947
9243
Group
Condition
mRNA
_871
mRNA
_872
mRNA
_873
mRNA
_874
mRNA
_875
9239
9240
9241
9242
9243
growth on ypd
YPD
N.D.
N.D.
N.D.
-0.8
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
N.D.
-1.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
N.D.
-0.6
-0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
N.D.
-0.7
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
N.D.
-0.6
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
N.D.
-0.4
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
N.D.
-0.1
-0.4
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
N.D.
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
N.D.
-0.6
+0.2
growth on oleic acid
YNB Glucose
N.D.
N.D.
N.D.
-0.7
+0.3
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
N.D.
-0.4
+0.1
auxotrophy
Dropout Complete
N.D.
N.D.
N.D.
+0.0
-0.3
auxotrophy
YNB Glucose
N.D.
N.D.
N.D.
-0.2
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
N.D.
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
N.D.
-0.3
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
N.D.
-0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
N.D.
+0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
N.D.
+0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
N.D.
+0.6
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
N.D.
+0.2
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
N.D.
+0.7
+0.5
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