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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9240 and 9241 are separated by 284 nucleotides
9241 and 9242 are separated by 329 nucleotides
9242 and 9243 are separated by 25 nucleotides
9243 and 9244 are separated by 678 nucleotides
mRNA_872: 9240 - K01852 LSS, ERG7 lanosterol synthase, at 2,080,935 to 2,083,844
9240
mRNA_873: 9241 - K17497 PMM phosphomannomutase, at 2,084,129 to 2,085,860
9241
mRNA_874: 9242 - BLAST Pc13g07060 [Penicillium rubens Wisconsin 54-1255], at 2,086,190 to 2,086,635
9242
mRNA_875: 9243 - KOG2401 Predicted MutS-related protein involved in mismatch repair, at 2,086,661 to 2,088,947
9243
mRNA_876: 9244 - K00297 metF, MTHFR methylenetetrahydrofolate reductase (NADPH), at 2,089,626 to 2,091,862
9244
Group
Condition
mRNA
_872
mRNA
_873
mRNA
_874
mRNA
_875
mRNA
_876
9240
9241
9242
9243
9244
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.6
-0.1
-4.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.6
-0.4
-3.6
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.7
+0.3
-3.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.1
+0.1
-3.7
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.4
+0.1
-3.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.4
-0.3
-2.6
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.3
+0.2
-3.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.6
-0.2
-3.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-1.2
+0.2
-1.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.0
+0.1
-2.7
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.2
+0.1
-2.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.6
+0.2
-2.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.7
+0.5
-3.7
auxotrophy
YNB Glucose
N.D.
N.D.
-0.2
-0.1
-1.8
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.1
-0.4
-0.8
growth on ypd
YPD
N.D.
N.D.
-0.8
-0.4
+0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.7
-0.2
-0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.2
-0.1
-0.5
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.3
-0.2
+0.2
auxotrophy
Dropout Complete
N.D.
N.D.
+0.0
-0.3
+0.6
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.2
+0.2
+1.0
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