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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9242 and 9243 are separated by 25 nucleotides
9243 and 9244 are separated by 678 nucleotides
9244 and 9245 are separated by 804 nucleotides
9245 and 9246 are separated by 357 nucleotides
mRNA_874: 9242 - BLAST Pc13g07060 [Penicillium rubens Wisconsin 54-1255], at 2,086,190 to 2,086,635
9242
mRNA_875: 9243 - KOG2401 Predicted MutS-related protein involved in mismatch repair, at 2,086,661 to 2,088,947
9243
mRNA_876: 9244 - K00297 metF, MTHFR methylenetetrahydrofolate reductase (NADPH), at 2,089,626 to 2,091,862
9244
mRNA_877: 9245 - K07425 CYP4A alkane 1-monooxygenase, at 2,092,667 to 2,095,053
9245
mRNA_878: 9246 - K14692 SLC30A5_7, ZNT5_7, MTP, MSC2 solute carrier family 30 (zinc transporter), member 5/7, at 2,095,411 to 2,098,626
9246
Group
Condition
mRNA
_874
mRNA
_875
mRNA
_876
mRNA
_877
mRNA
_878
9242
9243
9244
9245
9246
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
-0.1
-4.0
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
-0.4
-3.6
+0.5
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.1
-3.7
+0.0
-0.2
growth on oleic acid
YNB Glucose
-0.7
+0.3
-3.3
+0.1
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
-0.3
-2.6
-0.0
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.2
-3.0
-0.1
+0.2
growth on ricinoleic acid
YNB Glucose
-0.4
+0.1
-3.0
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.2
+0.2
-1.8
+0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
-0.2
-3.4
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
+0.2
-2.1
+0.2
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.1
-2.7
+0.2
+0.3
growth on oleic acid
YNB Oleic Acid
-0.2
+0.1
-2.4
+0.2
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.7
+0.5
-3.7
+0.2
+0.4
growth on ypd
YPD
-0.8
-0.4
+0.0
-0.3
-0.1
auxotrophy
YNB Glucose
-0.2
-0.1
-1.8
+0.0
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.4
-0.8
-0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.7
-0.2
-0.3
+0.0
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.2
+0.2
-0.2
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.1
-0.5
+0.2
+0.2
auxotrophy
Dropout Complete
+0.0
-0.3
+0.6
-0.1
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.2
+1.0
+0.0
+0.2
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