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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9244 and 9245 are separated by 804 nucleotides
9245 and 9246 are separated by 357 nucleotides
9246 and 9247 are separated by 1120 nucleotides
9247 and 9248 are separated by 252 nucleotides
mRNA_876: 9244 - K00297 metF, MTHFR methylenetetrahydrofolate reductase (NADPH), at 2,089,626 to 2,091,862
9244
mRNA_877: 9245 - K07425 CYP4A alkane 1-monooxygenase, at 2,092,667 to 2,095,053
9245
mRNA_878: 9246 - K14692 SLC30A5_7, ZNT5_7, MTP, MSC2 solute carrier family 30 (zinc transporter), member 5/7, at 2,095,411 to 2,098,626
9246
mRNA_879: 9247 - K12412 MCM1 pheromone receptor transcription factor, at 2,099,747 to 2,101,589
9247
mRNA_880: 9248 - K10632 BRAP BRCA1-associated protein, at 2,101,842 to 2,104,437
9248
Group
Condition
mRNA
_876
mRNA
_877
mRNA
_878
mRNA
_879
mRNA
_880
9244
9245
9246
9247
9248
facs on lipid accumulation
Sorted Low BODIPY Gate
-3.7
+0.0
-0.2
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-4.0
+0.2
-0.2
-0.1
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-3.4
+0.3
+0.2
-0.0
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-2.6
-0.0
+0.1
+0.2
-0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
-3.6
+0.5
+0.1
+0.0
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-3.7
+0.2
+0.4
+0.2
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-3.0
-0.1
+0.2
+0.0
+0.0
growth on oleic acid
YNB Glucose
-3.3
+0.1
+0.4
-0.2
+0.6
growth on ricinoleic acid
YNB Glucose
-3.0
+0.1
+0.2
+0.0
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-2.7
+0.2
+0.3
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.8
+0.1
-0.1
+0.2
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-2.1
+0.2
-0.2
+0.1
-0.0
auxotrophy
YNB Glucose
-1.8
+0.0
+0.3
+0.1
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
-0.1
-0.1
+0.0
-0.4
growth on oleic acid
YNB Oleic Acid
-2.4
+0.2
+0.4
+0.1
+0.6
growth on ypd
YPD
+0.0
-0.3
-0.1
-0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.3
+0.0
-0.0
+0.3
-0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.2
+0.0
+0.1
-0.6
ypd buoyancy
40 hrs High Buoyancy
-0.5
+0.2
+0.2
+0.3
-0.4
auxotrophy
Dropout Complete
+0.6
-0.1
+0.4
+0.0
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+1.0
+0.0
+0.2
-0.2
-0.2
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