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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9246 and 9247 are separated by 1120 nucleotides
9247 and 9248 are separated by 252 nucleotides
9248 and 9249 are separated by 123 nucleotides
9249 and 9250 are separated by 77 nucleotides
mRNA_878: 9246 - K14692 SLC30A5_7, ZNT5_7, MTP, MSC2 solute carrier family 30 (zinc transporter), member 5/7, at 2,095,411 to 2,098,626
9246
mRNA_879: 9247 - K12412 MCM1 pheromone receptor transcription factor, at 2,099,747 to 2,101,589
9247
mRNA_880: 9248 - K10632 BRAP BRCA1-associated protein, at 2,101,842 to 2,104,437
9248
mRNA_881: 9249 - KOG4626 O-linked N-acetylglucosamine transferase OGT, at 2,104,561 to 2,105,712
9249
mRNA_882: 9250 - K07390 grxD, GLRX5 monothiol glutaredoxin, at 2,105,790 to 2,106,591
9250
Group
Condition
mRNA
_878
mRNA
_879
mRNA
_880
mRNA
_881
mRNA
_882
9246
9247
9248
9249
9250
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.0
-0.4
-1.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.1
-0.6
+0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.2
-0.8
+0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.1
-0.4
+0.6
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.0
+0.1
-0.4
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.3
-0.5
+0.1
N.D.
growth on ypd
YPD
-0.1
-0.2
-0.1
+0.4
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.2
-0.2
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.1
-0.0
+0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.0
-0.5
+0.4
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
+0.2
-0.0
-0.4
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.3
-0.4
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.0
+0.0
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.2
-0.4
+0.5
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.0
+0.0
+0.2
N.D.
growth on ricinoleic acid
YNB Glucose
+0.2
+0.0
+0.3
-0.1
N.D.
auxotrophy
YNB Glucose
+0.3
+0.1
-0.2
+0.3
N.D.
auxotrophy
Dropout Complete
+0.4
+0.0
-0.3
+0.5
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.1
+0.5
+0.8
N.D.
growth on oleic acid
YNB Glucose
+0.4
-0.2
+0.6
+0.5
N.D.
growth on oleic acid
YNB Oleic Acid
+0.4
+0.1
+0.6
+0.2
N.D.
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