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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9247 and 9248 are separated by 252 nucleotides
9248 and 9249 are separated by 123 nucleotides
9249 and 9250 are separated by 77 nucleotides
9250 and 9251 are separated by 370 nucleotides
mRNA_879: 9247 - K12412 MCM1 pheromone receptor transcription factor, at 2,099,747 to 2,101,589
9247
mRNA_880: 9248 - K10632 BRAP BRCA1-associated protein, at 2,101,842 to 2,104,437
9248
mRNA_881: 9249 - KOG4626 O-linked N-acetylglucosamine transferase OGT, at 2,104,561 to 2,105,712
9249
mRNA_882: 9250 - K07390 grxD, GLRX5 monothiol glutaredoxin, at 2,105,790 to 2,106,591
9250
mRNA_883: 9251 - Hypothetical Protein, at 2,106,962 to 2,108,755
9251
Group
Condition
mRNA
_879
mRNA
_880
mRNA
_881
mRNA
_882
mRNA
_883
9247
9248
9249
9250
9251
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.4
-1.2
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.8
+0.3
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.6
+0.0
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.1
-0.4
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.0
-0.4
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.2
+0.2
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.5
+0.4
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.5
+0.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.0
-0.0
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.4
+0.2
N.D.
N.D.
growth on ypd
YPD
-0.2
-0.1
+0.4
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.4
+0.6
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.0
+0.1
N.D.
N.D.
auxotrophy
YNB Glucose
+0.1
-0.2
+0.3
N.D.
N.D.
auxotrophy
Dropout Complete
+0.0
-0.3
+0.5
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.0
+0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.0
+0.3
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.4
+0.5
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
+0.6
+0.2
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.2
+0.6
+0.5
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.5
+0.8
N.D.
N.D.
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