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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9251 and 9252 are separated by 2257 nucleotides
9252 and 9253 are separated by 118 nucleotides
9253 and 9254 are separated by 512 nucleotides
9254 and 9255 are separated by 1028 nucleotides
mRNA_883: 9251 - Hypothetical Protein, at 2,106,962 to 2,108,755
9251
mRNA_884: 9252 - Hypothetical Protein, at 2,111,013 to 2,111,465
9252
mRNA_885: 9253 - K10590 TRIP12 E3 ubiquitin-protein ligase TRIP12, at 2,111,584 to 2,117,077
9253
mRNA_886: 9254 - KOG2504 Monocarboxylate transporter, at 2,117,590 to 2,119,437
9254
mRNA_887: 9255 - K04409 PAK1 p21-activated kinase 1, at 2,120,466 to 2,123,959
9255
Group
Condition
mRNA
_883
mRNA
_884
mRNA
_885
mRNA
_886
mRNA
_887
9251
9252
9253
9254
9255
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-1.2
-0.6
-0.4
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.6
-1.6
-0.1
+0.1
auxotrophy
Dropout Complete
N.D.
-0.2
-0.0
-0.3
+0.1
growth on ypd
YPD
N.D.
-0.4
+0.0
+0.3
-0.0
auxotrophy
YNB Glucose
N.D.
-0.4
+0.1
-0.0
+0.4
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
+0.2
-0.2
+0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.4
+0.2
+0.2
+0.3
growth on ricinoleic acid
YNB Glucose
N.D.
-0.0
-0.4
+0.1
+0.7
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.2
+0.0
-0.2
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.5
-0.3
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.2
+0.0
-0.1
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
-0.6
+0.1
+1.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.4
-0.0
-0.0
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.2
+0.2
-0.2
+0.6
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.8
+0.1
-0.1
+0.2
growth on oleic acid
YNB Glucose
N.D.
+0.2
+0.2
-0.0
+0.6
growth on oleic acid
YNB Oleic Acid
N.D.
+0.0
+0.3
-0.1
+0.8
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.7
+0.1
+0.3
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.2
-0.2
+0.3
+1.4
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.6
-0.1
+0.5
+0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.7
+1.0
+0.2
+0.1
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