Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 9255 and 9256 are separated by 200 nucleotides9256 and 9257 are separated by 986 nucleotides9257 and 9258 are separated by 120 nucleotides9258 and 9259 are separated by 327 nucleotides mRNA_887: 9255 - K04409 PAK1 p21-activated kinase 1, at 2,120,466 to 2,123,959 9255 mRNA_888: 9256 - KOG1773 Stress responsive protein, at 2,124,160 to 2,125,041 9256 mRNA_889: 9257 - HMMPfam-Ribonuclease III domain-PF00636,ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SMART-Ribonuclease III family-SM00535,SUPERFAMILY--SSF69065, at 2,126,028 to 2,126,699 9257 mRNA_890: 9258 - HMMPfam-Double-stranded RNA binding motif-PF00035,HMMPfam-Ribonuclease-III-like-PF14622,ProSiteProfiles-Double stranded RNA-binding domain (dsRBD) profile.-PS50137,ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SMART-Double-stranded RNA binding motif-SM00358,SMART-Ribonuclease III family-SM00535,SUPERFAMILY--SSF54768,SUPERFAMILY--SSF69065, at 2,126,820 to 2,127,805 9258 mRNA_891: 9259 - K01405 PRD1 saccharolysin, at 2,128,133 to 2,130,693 9259
Group Condition mRNA_887 mRNA_888 mRNA_889 mRNA_890 mRNA_891
9255 9256 9257 9258 9259
ypd buoyancy 40 hrs No Buoyancy Separation -0.3 -0.3 -0.9 -0.9 -0.4
ypd buoyancy 40 hrs High Buoyancy +0.3 -0.1 -0.2 -0.4 -0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.1 -0.6 +0.5 -0.4 +0.2
ypd buoyancy 40 hrs Median Buoyancy +0.2 -0.1 +0.1 -0.1 -0.2
auxotrophy Dropout Complete +0.1 -0.7 +0.1 +0.3 +0.0
growth on ricinoleic acid YNB Glucose +0.7 -0.5 -0.6 +0.1 +0.1
auxotrophy YNB Glucose 75mM Methionine +0.3 -0.7 +0.2 +0.2 -0.0
auxotrophy YNB Glucose 75mM Arginine +0.3 -0.5 -0.2 +0.5 +0.1
ypd buoyancy 40 hrs Low Buoyancy +0.4 +0.2 -0.0 +0.0 -0.2
growth on ypd YPD -0.0 -0.1 +0.6 -0.2 +0.2
facs on lipid accumulation Sorted No BODIPY Gate +0.2 -0.3 +0.1 +0.3 +0.1
auxotrophy YNB Glucose +0.4 -0.3 +0.0 +0.3 +0.3
facs on lipid accumulation Sorted Low BODIPY Gate +0.6 -0.3 -0.6 +0.6 +0.4
growth on ricinoleic acid YNB Methylricinoleic Acid +1.2 -0.4 -0.2 +0.0 +0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.6 -0.0 +0.5 -0.4 +0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.5 -0.0 +0.7 -0.4 +0.1
facs on lipid accumulation Sorted High BODIPY Gate +0.2 +0.1 +0.0 +0.3 +0.3
growth on ricinoleic acid YNB Ricinoleic Acid +1.4 -0.4 -0.2 +0.0 +0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.1 +0.0 +1.1 -0.3 +0.2
growth on oleic acid YNB Glucose +0.6 -0.1 +0.3 +0.3 +0.3
growth on oleic acid YNB Oleic Acid +0.8 +0.5 -0.3 +0.3 +0.1
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