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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9255 and 9256 are separated by 200 nucleotides
9256 and 9257 are separated by 986 nucleotides
9257 and 9258 are separated by 120 nucleotides
9258 and 9259 are separated by 327 nucleotides
mRNA_887: 9255 - K04409 PAK1 p21-activated kinase 1, at 2,120,466 to 2,123,959
9255
mRNA_888: 9256 - KOG1773 Stress responsive protein, at 2,124,160 to 2,125,041
9256
mRNA_889: 9257 - HMMPfam-Ribonuclease III domain-PF00636,ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SMART-Ribonuclease III family-SM00535,SUPERFAMILY--SSF69065, at 2,126,028 to 2,126,699
9257
mRNA_890: 9258 - HMMPfam-Double-stranded RNA binding motif-PF00035,HMMPfam-Ribonuclease-III-like-PF14622,ProSiteProfiles-Double stranded RNA-binding domain (dsRBD) profile.-PS50137,ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SMART-Double-stranded RNA binding motif-SM00358,SMART-Ribonuclease III family-SM00535,SUPERFAMILY--SSF54768,SUPERFAMILY--SSF69065, at 2,126,820 to 2,127,805
9258
mRNA_891: 9259 - K01405 PRD1 saccharolysin, at 2,128,133 to 2,130,693
9259
Group
Condition
mRNA
_887
mRNA
_888
mRNA
_889
mRNA
_890
mRNA
_891
9255
9256
9257
9258
9259
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.3
-0.9
-0.9
-0.4
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.1
-0.2
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.6
+0.5
-0.4
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.1
+0.1
-0.1
-0.2
auxotrophy
Dropout Complete
+0.1
-0.7
+0.1
+0.3
+0.0
growth on ricinoleic acid
YNB Glucose
+0.7
-0.5
-0.6
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.7
+0.2
+0.2
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.5
-0.2
+0.5
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.4
+0.2
-0.0
+0.0
-0.2
growth on ypd
YPD
-0.0
-0.1
+0.6
-0.2
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.3
+0.1
+0.3
+0.1
auxotrophy
YNB Glucose
+0.4
-0.3
+0.0
+0.3
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.6
-0.3
-0.6
+0.6
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.2
-0.4
-0.2
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.6
-0.0
+0.5
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
-0.0
+0.7
-0.4
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.1
+0.0
+0.3
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.4
-0.4
-0.2
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.0
+1.1
-0.3
+0.2
growth on oleic acid
YNB Glucose
+0.6
-0.1
+0.3
+0.3
+0.3
growth on oleic acid
YNB Oleic Acid
+0.8
+0.5
-0.3
+0.3
+0.1
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