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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9256 and 9257 are separated by 986 nucleotides
9257 and 9258 are separated by 120 nucleotides
9258 and 9259 are separated by 327 nucleotides
9259 and 9260 are separated by 456 nucleotides
mRNA_888: 9256 - KOG1773 Stress responsive protein, at 2,124,160 to 2,125,041
9256
mRNA_889: 9257 - HMMPfam-Ribonuclease III domain-PF00636,ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SMART-Ribonuclease III family-SM00535,SUPERFAMILY--SSF69065, at 2,126,028 to 2,126,699
9257
mRNA_890: 9258 - HMMPfam-Double-stranded RNA binding motif-PF00035,HMMPfam-Ribonuclease-III-like-PF14622,ProSiteProfiles-Double stranded RNA-binding domain (dsRBD) profile.-PS50137,ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SMART-Double-stranded RNA binding motif-SM00358,SMART-Ribonuclease III family-SM00535,SUPERFAMILY--SSF54768,SUPERFAMILY--SSF69065, at 2,126,820 to 2,127,805
9258
mRNA_891: 9259 - K01405 PRD1 saccharolysin, at 2,128,133 to 2,130,693
9259
mRNA_892: 9260 - K11827 AP2S1 AP-2 complex subunit sigma-1, at 2,131,150 to 2,131,840
9260
Group
Condition
mRNA
_888
mRNA
_889
mRNA
_890
mRNA
_891
mRNA
_892
9256
9257
9258
9259
9260
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.9
-0.9
-0.4
N.D.
growth on ricinoleic acid
YNB Glucose
-0.5
-0.6
+0.1
+0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.2
-0.4
-0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.2
+0.0
+0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
-0.1
-0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-0.2
+0.0
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.7
+0.2
+0.2
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
+0.5
-0.4
+0.2
N.D.
auxotrophy
Dropout Complete
-0.7
+0.1
+0.3
+0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.0
+0.0
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-0.2
+0.5
+0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.6
+0.6
+0.4
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.1
+0.3
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.5
-0.4
+0.1
N.D.
auxotrophy
YNB Glucose
-0.3
+0.0
+0.3
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.7
-0.4
+0.1
N.D.
growth on ypd
YPD
-0.1
+0.6
-0.2
+0.2
N.D.
growth on oleic acid
YNB Oleic Acid
+0.5
-0.3
+0.3
+0.1
N.D.
growth on oleic acid
YNB Glucose
-0.1
+0.3
+0.3
+0.3
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.0
+0.3
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+1.1
-0.3
+0.2
N.D.
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