Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 9256 and 9257 are separated by 986 nucleotides9257 and 9258 are separated by 120 nucleotides9258 and 9259 are separated by 327 nucleotides9259 and 9260 are separated by 456 nucleotides mRNA_888: 9256 - KOG1773 Stress responsive protein, at 2,124,160 to 2,125,041 9256 mRNA_889: 9257 - HMMPfam-Ribonuclease III domain-PF00636,ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SMART-Ribonuclease III family-SM00535,SUPERFAMILY--SSF69065, at 2,126,028 to 2,126,699 9257 mRNA_890: 9258 - HMMPfam-Double-stranded RNA binding motif-PF00035,HMMPfam-Ribonuclease-III-like-PF14622,ProSiteProfiles-Double stranded RNA-binding domain (dsRBD) profile.-PS50137,ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SMART-Double-stranded RNA binding motif-SM00358,SMART-Ribonuclease III family-SM00535,SUPERFAMILY--SSF54768,SUPERFAMILY--SSF69065, at 2,126,820 to 2,127,805 9258 mRNA_891: 9259 - K01405 PRD1 saccharolysin, at 2,128,133 to 2,130,693 9259 mRNA_892: 9260 - K11827 AP2S1 AP-2 complex subunit sigma-1, at 2,131,150 to 2,131,840 9260
Group Condition mRNA_888 mRNA_889 mRNA_890 mRNA_891 mRNA_892
9256 9257 9258 9259 9260
ypd buoyancy 40 hrs No Buoyancy Separation -0.3 -0.9 -0.9 -0.4 N.D.
growth on ricinoleic acid YNB Glucose -0.5 -0.6 +0.1 +0.1 N.D.
ypd buoyancy 40 hrs High Buoyancy -0.1 -0.2 -0.4 -0.1 N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid -0.4 -0.2 +0.0 +0.1 N.D.
ypd buoyancy 40 hrs Median Buoyancy -0.1 +0.1 -0.1 -0.2 N.D.
growth on ricinoleic acid YNB Ricinoleic Acid -0.4 -0.2 +0.0 +0.2 N.D.
auxotrophy YNB Glucose 75mM Methionine -0.7 +0.2 +0.2 -0.0 N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.6 +0.5 -0.4 +0.2 N.D.
auxotrophy Dropout Complete -0.7 +0.1 +0.3 +0.0 N.D.
ypd buoyancy 40 hrs Low Buoyancy +0.2 -0.0 +0.0 -0.2 N.D.
auxotrophy YNB Glucose 75mM Arginine -0.5 -0.2 +0.5 +0.1 N.D.
facs on lipid accumulation Sorted Low BODIPY Gate -0.3 -0.6 +0.6 +0.4 N.D.
facs on lipid accumulation Sorted No BODIPY Gate -0.3 +0.1 +0.3 +0.1 N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.0 +0.5 -0.4 +0.1 N.D.
auxotrophy YNB Glucose -0.3 +0.0 +0.3 +0.3 N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.0 +0.7 -0.4 +0.1 N.D.
growth on ypd YPD -0.1 +0.6 -0.2 +0.2 N.D.
growth on oleic acid YNB Oleic Acid +0.5 -0.3 +0.3 +0.1 N.D.
growth on oleic acid YNB Glucose -0.1 +0.3 +0.3 +0.3 N.D.
facs on lipid accumulation Sorted High BODIPY Gate +0.1 +0.0 +0.3 +0.3 N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.0 +1.1 -0.3 +0.2 N.D.
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