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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9257 and 9258 are separated by 120 nucleotides
9258 and 9259 are separated by 327 nucleotides
9259 and 9260 are separated by 456 nucleotides
9260 and 9261 are separated by 1659 nucleotides
mRNA_889: 9257 - HMMPfam-Ribonuclease III domain-PF00636,ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SMART-Ribonuclease III family-SM00535,SUPERFAMILY--SSF69065, at 2,126,028 to 2,126,699
9257
mRNA_890: 9258 - HMMPfam-Double-stranded RNA binding motif-PF00035,HMMPfam-Ribonuclease-III-like-PF14622,ProSiteProfiles-Double stranded RNA-binding domain (dsRBD) profile.-PS50137,ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SMART-Double-stranded RNA binding motif-SM00358,SMART-Ribonuclease III family-SM00535,SUPERFAMILY--SSF54768,SUPERFAMILY--SSF69065, at 2,126,820 to 2,127,805
9258
mRNA_891: 9259 - K01405 PRD1 saccharolysin, at 2,128,133 to 2,130,693
9259
mRNA_892: 9260 - K11827 AP2S1 AP-2 complex subunit sigma-1, at 2,131,150 to 2,131,840
9260
mRNA_893: 9261 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 2,133,500 to 2,134,793
9261
Group
Condition
mRNA
_889
mRNA
_890
mRNA
_891
mRNA
_892
mRNA
_893
9257
9258
9259
9260
9261
ypd buoyancy
40 hrs No Buoyancy Separation
-0.9
-0.9
-0.4
N.D.
-0.4
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.4
-0.1
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
-0.2
N.D.
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.0
-0.2
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.7
-0.4
+0.1
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
-0.4
+0.1
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.3
+0.1
N.D.
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
+0.6
+0.4
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
-0.4
+0.2
N.D.
-0.0
growth on ricinoleic acid
YNB Glucose
-0.6
+0.1
+0.1
N.D.
+0.6
growth on ypd
YPD
+0.6
-0.2
+0.2
N.D.
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.0
+0.2
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.2
-0.0
N.D.
-0.0
auxotrophy
Dropout Complete
+0.1
+0.3
+0.0
N.D.
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.0
+0.1
N.D.
+0.6
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.5
+0.1
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
-0.3
+0.3
+0.1
N.D.
+0.5
auxotrophy
YNB Glucose
+0.0
+0.3
+0.3
N.D.
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.3
+0.3
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.1
-0.3
+0.2
N.D.
-0.0
growth on oleic acid
YNB Glucose
+0.3
+0.3
+0.3
N.D.
+0.2
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