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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9259 and 9260 are separated by 456 nucleotides
9260 and 9261 are separated by 1659 nucleotides
9261 and 9262 are separated by 350 nucleotides
9262 and 9263 are separated by 81 nucleotides
mRNA_891: 9259 - K01405 PRD1 saccharolysin, at 2,128,133 to 2,130,693
9259
mRNA_892: 9260 - K11827 AP2S1 AP-2 complex subunit sigma-1, at 2,131,150 to 2,131,840
9260
mRNA_893: 9261 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 2,133,500 to 2,134,793
9261
mRNA_894: 9262 - K01694 TRP tryptophan synthase, at 2,135,144 to 2,138,242
9262
mRNA_895: 9263 - Hypothetical Protein, at 2,138,324 to 2,139,177
9263
Group
Condition
mRNA
_891
mRNA
_892
mRNA
_893
mRNA
_894
mRNA
_895
9259
9260
9261
9262
9263
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
N.D.
-0.4
N.D.
-1.3
auxotrophy
YNB Glucose 75mM Methionine
-0.0
N.D.
-0.0
N.D.
-0.9
ypd buoyancy
40 hrs Median Buoyancy
-0.2
N.D.
-0.3
N.D.
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
N.D.
-0.2
N.D.
-0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.2
N.D.
-0.1
N.D.
+0.0
growth on ypd
YPD
+0.2
N.D.
-0.3
N.D.
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
-0.1
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
N.D.
-0.1
N.D.
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
N.D.
+0.2
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
+0.1
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
-0.5
N.D.
+1.0
auxotrophy
YNB Glucose
+0.3
N.D.
+0.2
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
N.D.
+0.2
N.D.
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
-0.3
N.D.
+0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
N.D.
-0.0
N.D.
+0.6
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
+0.6
N.D.
-0.0
auxotrophy
Dropout Complete
+0.0
N.D.
+0.0
N.D.
+0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
N.D.
+0.6
N.D.
+0.1
growth on oleic acid
YNB Glucose
+0.3
N.D.
+0.2
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
N.D.
-0.0
N.D.
+1.2
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
+0.5
N.D.
+0.9
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